HelmholtzAI-Consultants-Munich/napari-organoid-counter

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Python
License
MIT License
Created over 2 years ago
Updated 4 months ago

HelmholtzAI-Consultants-Munich/napari-organoid-counter

HelmholtzAI-Consultants-Munich

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A napari plugin for counting organoids from brightfield microscopy images with deep learning

XAI-Tutorials

Self-explanatory tutorials for different model-agnostic and model-specific XAI methods

Jupyter Notebook

Quicksetup-ai

A flexible template, as a quick setup for deep learning projects in pytorch-lightning

Automatic-Cell-Counter

A GUI based on napari for counting cells automatically in cell migration experiments

fg-clustering

Explainability for Random Forest Models.

Jupyter Notebook

PySDDR

A python package for semi-structured deep distributional regression

Jupyter Notebook

oligo-designer-toolsuite

Develop custom oligo design pipelines.

data-centric-platform

A tool for all-kinds segmentation in microscopy imaging which encourages data centric approaches

Particle-detection-in-3D-cellular-cryo-electron-tomograms

Deep learning based particle detection in 3D cellular cryo-electron tomograms

ArtsyML

Code for blending people in images or videos with biological images using style transfer.

EMcapsulins_segmentation

segmentation models for EMcapsulins segmentation

Echo2Pheno

A deep learning application to uncover echocardiographic phenotypes

Jupyter Notebook

DimRed-Course

Material for the dimensionality reduction course

Jupyter Notebook

oligo-designer-toolsuite-AI-filters

AI plug-ins for the Oligo Designer Toolsuite package

ArtsyML_app

AURORA

WARNING: This code base is no longer supported. It still works, but we recommended using [BrainLes AURORA](https://github.com/BrainLesion/AURORA/) instead, which offers much more flexibility in a convenient PyPI package.

Organoid-Counting