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EXPERT
Transfer Learning-enabled context-aware microbial source trackingONN4MST
Ontology-aware neural network (ONN) for microbial community sample source tracking!EXPERT-Disease-GGMP
Overcoming regional limitations: Transfer learning for cross-regional microbial-based diagnosis of diseasesmetaPrism
Ultra-fast and highly accurate microbial community structure search utilizing dual-indexing and parallel computationBGC-Prophet
straingems
straingemsDeepMicroCancer
MetaSource
The source code and intermediate results of "Structure and function predictions of protein families by a microbiome-based targeted approach: decoding the link of microbiome niches with protein family homologous sequences"DeepTaxa
DeepTaxa: a deep learning approach for ultra-fast classification of genomesMGM
MGM (Microbial General Model) as a large-scaled pretrained language model for interpretable microbiome data analysis.Meta-Prism-2.0
Efficient microbial communities similarites calculation and comparison toolGAN-GMHI
ONN4ARG
ONN4ARG is an ontology-aware neural network model, which employs a novel ontology-aware layer for antibiotic resistance gene prediction and classification.MH-E-I
Microbioal-based Human / Environment IndexITS2
Source code for ITS2 websiteASD-cancer
Meta-Sorter
Improving biome labeling for tens of thousands of inaccurately annotated microbial community samples based on neural network and transfer learningCorrelation-Centric-Network
Source code for the research:"Correlation-Centric Network (CCN) representation for microbial co-occurrence patterns: new insights for microbial ecology "Biome-sorter
Biome-sorter: an Ontology-aware Neural Network enhanced auto sorter for microbial community sample without biome source information.Love Open Source and this site? Check out how you can help us