GreenleafLab/amplicon-smf GreenleafLab/amplicon-smf

  • Stars
    star
    2
  • Language
    Python
  • License
    MIT License
  • Created 10 months ago
  • Updated about 2 months ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
GreenleafLab/amplicon-smf
github

GreenleafLab

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Code for processing single-molecule footprinting data on synthetic amplicons (from Doughty*, Hinks*, Schaepe*, et al. 2024).

More Repositories

1

ArchR

ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
R
380
star
2

chromVAR

chromatin Variability Across Regions (of the genome!)
R
153
star
3

NucleoATAC

nucleosome calling using ATAC-seq
Python
106
star
4

10x-scATAC-2019

Publication Page for Satpathy*, Granja* et al 2019
R
92
star
5

MPAL-Single-Cell-2019

Publication Page for MPAL Paper 2019
R
76
star
6

motifmatchr

Fast motif matching in R
C++
41
star
7

brainchromatin

Code used to analyze single cell RNA and ATAC sequencing in developing human brain
R
31
star
8

NucleoATACR

R package for reading in & working with NucleoATAC outputs
R
26
star
9

chromVARmotifs

R package with motifs for use with chromVAR
R
24
star
10

scScalpChromatin

R
22
star
11

ArchR_2020

Publication Page for ArchR Manuscript 2020
HTML
22
star
12

ChrAccR

Analyzing chromatin accessibility data in R
R
17
star
13

Brain_ASD

Python
9
star
14

shareseq-pipeline

Python
5
star
15

LKB1_2021

R
3
star
16

NEAT-seq_reproducibility

R
3
star
17

SpearATAC_MS_2021

R
3
star
18

ImagingStationController

Hardware-control software for a sequencing flowcell imaging station based on GAIIx components
MATLAB
2
star
19

puflibs

Python
2
star
20

snakeATAC_singularity

Python
2
star
21

array_fitting_tools

Python
1
star
22

ChrAccRex

Example data for ChrAccR
R
1
star
23

nnn_paper

Analysis for "High-Throughput DNA melt measurements enable improved models of DNA folding thermodynamics".
Jupyter Notebook
1
star
24

array_analysis

Snakemake pipeline for Greenleaf lab array preprocessing.
Python
1
star
25

matcha

Python library for fast barcode matching in sequencing data
Python
1
star