Gibbsdavidl/Immune-Subtype-Clustering

Stars
19
Rank 1,163,249 (Top 23 %)
Language
Jupyter Notebook
Created over 6 years ago
Updated over 5 years ago

Gibbsdavidl/Immune-Subtype-Clustering

Gibbsdavidl

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".

CatterPlots

Did you ever wish you could make scatter plots with cat shaped points? Now you can!

miergolf

Influence maximization

ConsensusClusterParallelPlus

Parallelized version of the bioconductor package ConsensusClusterPlus

ProCoNA

Protein co-expression network analysis

CatterPlotsPipeline

Example of using the Google Genomics Pipeline to produce random CatterPlots.

scPySingscore

Like singscore, but for single cell rna-seq. Made for scanpy anndata objects.

Jupyter Notebook

GeneSignalProc

Application of graph signal processing to gene expression data.

CWL_scatter_example

An example of a 'scatter' and 'gather' using CWL, and the google cloud.

Common Workflow Language

SymbolicEntropySystems

using symbolic entropy to compute transfer entropy

stan-zoo

A collection of common statistical tests implemented as Stan Bayesian regression models.

perminfotheo

permutation test on conditional mutual information, on sum over all pairs given two matrices

fastukey

A fast alternative for Tukey's biweight estimator of mean and correlation.