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isb_course_2020
Materials and tutorials for the 2020 ISB Microbiome Courseisb_course_2023
Materials and presentation for the 2023 ISB Microbiome course.isb_course_2022
Materials and presentation for the 2022 ISB Microbiome course.isb_course_2021
Materials and presentations for the 2021 ISB Virtual Microbiome Series.mbtools
R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.ccmb_workshop
Data and materials for the CCMB workshop on Cloud Computing and Microbiome Bioinformatics.pipelines
Pipelines used in the lab.human-microbiome-time-series-growth-phase-estimation
Analysis script for article "Growth phase estimation for abundant bacterial populations sampled longitudinally from human stool metagenomes."2021_microbiome_course_utils
A small Python package used for the course.manuals-and-policies
weight_loss_2019
Data and scripts for the weight loss project funded by the Innovator Award.aquaponics
Analysis code and scripts for the Aquaponics collab with Jessica Day et. al.evan_rotation_notebooks
Repository for Evan Pepper's Fall 2020 Rotationcdiff_invasion
2021_data_literacy
Data for the Data Literacy initiativeamerican_gut
Project materials to analyze the American Gut data set.wiki
General good-to-know stuff.Generally-Healthy-Cohort-BMF
Generally-healthy individuals with aberrant bowel movement frequencies show enrichment for microbially-derived blood metabolites associated with impaired kidney function.american-gut-app
Source repository for the American Gut App.mmmih
Materials and slides for the 3rd Microbiome Movement – Maternal & Infant Health Summit 2021.Love Open Source and this site? Check out how you can help us