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Repository Details

Data for the Data Literacy initiative

More Repositories

1

isb_course_2020

Materials and tutorials for the 2020 ISB Microbiome Course
Jupyter Notebook
30
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2

isb_course_2023

Materials and presentation for the 2023 ISB Microbiome course.
Jupyter Notebook
23
star
3

isb_course_2022

Materials and presentation for the 2022 ISB Microbiome course.
Jupyter Notebook
23
star
4

isb_course_2021

Materials and presentations for the 2021 ISB Virtual Microbiome Series.
Jupyter Notebook
22
star
5

mbtools

R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.
R
20
star
6

ccmb_workshop

Data and materials for the CCMB workshop on Cloud Computing and Microbiome Bioinformatics.
Python
8
star
7

pipelines

Pipelines used in the lab.
Nextflow
6
star
8

human-microbiome-time-series-growth-phase-estimation

Analysis script for article "Growth phase estimation for abundant bacterial populations sampled longitudinally from human stool metagenomes."
HTML
3
star
9

2021_microbiome_course_utils

A small Python package used for the course.
Python
3
star
10

2021_gene_environment_interactions

Notebooks, code and intermediate data for the Arivale gene-environment interactions.
Jupyter Notebook
3
star
11

manuals-and-policies

2
star
12

weight_loss_2019

Data and scripts for the weight loss project funded by the Innovator Award.
R
2
star
13

aquaponics

Analysis code and scripts for the Aquaponics collab with Jessica Day et. al.
R
2
star
14

evan_rotation_notebooks

Repository for Evan Pepper's Fall 2020 Rotation
Jupyter Notebook
1
star
15

cdiff_invasion

Jupyter Notebook
1
star
16

american_gut

Project materials to analyze the American Gut data set.
Jupyter Notebook
1
star
17

wiki

General good-to-know stuff.
1
star
18

Generally-Healthy-Cohort-BMF

Generally-healthy individuals with aberrant bowel movement frequencies show enrichment for microbially-derived blood metabolites associated with impaired kidney function.
HTML
1
star
19

american-gut-app

Source repository for the American Gut App.
Python
1
star
20

mmmih

Materials and slides for the 3rd Microbiome Movement – Maternal & Infant Health Summit 2021.
HTML
1
star