GZHoffie/bucket-map

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Created about 3 years ago
Updated 7 months ago

GZHoffie/bucket-map

GZHoffie

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Implementation of BucketMap, a novel cache-efficient, bit-parallel and alignment-free short read mapping algorithm.

VE401-recitation-class

Interactive Mathematica notebooks illustrating the course content of VE401, Probabilistic Methods in Engineering at UM-SJTU Joint Institute.

CS2040S-tutorials

Tutorial Slides for CS2040S, Data Structures and Algorithms at NUS Computing.

independence-in-streams

This repository contains code for identifying correlation in a stream of samples. The sketching of sketches algorithm and the counter matrix algorithm are implemented and benchmarked.

Jupyter Notebook

approximate-string-matching

A repository of experimental code and benchmark for greedy/dynamic programming approximate string matching algorithms.

RL_Recommend

latex-syllabus

Converting the course schedule in the form of CSV into a LaTeX course syllabus.

Recommendation_BPR

kmer-count

Implementation of k-mer counting algorithms BFCounter and experimental implementation of Misra-Gries. The goal is to use as little memory as possible.

tc-benchmark

A pipeline for comparing existing taxonomy classification tools.

Jupyter Notebook

DNA-LLM

Jupyter Notebook

Approximate-String-Matching

A repository of experimental code and benchmark for greedy/dynamic programming approximate string matching algorithms.