FrederickHuangLin/ANCOM-Code-Archive FrederickHuangLin/ANCOM-Code-Archive

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    57
  • Rank 522,947 (Top 11 %)
  • Language
    R
  • License
    MIT License
  • Created about 5 years ago
  • Updated over 2 years ago
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FrederickHuangLin/ANCOM-Code-Archive
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FrederickHuangLin

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Repository Details

Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM function.

More Repositories

1

ANCOMBC

Differential abundance (DA) and correlation analyses for microbial absolute abundance data
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105
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2

ANCOM-BC-Code-Archive

Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check our ANCOMBC R package for the most up-to-date ANCOM-BC function.
HTML
29
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3

Microbiome-Review-Code-Archive

Data, scripts, and outputs for the npj Biofilms and Microbiomes paper "Analysis of microbial compositions: A review of normalization and differential abundance analysis"
HTML
10
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4

SECOM-Code-Archive

Archive: Data, scripts, and outputs for the paper "Sparse Estimation of Correlations among Microbiomes (SECOM)". Please check our ANCOMBC R package for the most up-to-date SECOM functions.
HTML
2
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5

Gut-Microbiome-and-HIV-Infection

Scripts and outputs for the paper "Signature changes in gut microbiome are associated with increased susceptibility to HIV-1 infection in MSM"
HTML
1
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6

ANCOM-BC2-Code-Archive

Archive: Data, scripts, and outputs for the paper "Multi-group Analysis of Compositions of Microbiomes with Covariate Adjustments and Repeated Measures". Please check our ANCOMBC R package for the most up-to-date ANCOM-BC function.
HTML
1
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7

Gut-Microbiome-and-Sexual-Behavior

Scripts and outputs for the paper "High risk sexual behavior is linked to changes in gut microbiome and systemic inflammation that lead to HIV-1 infection in men who have sex with men"
HTML
1
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8

Gut-Microbiome-and-Metabolic-Syndrome

The archive for data, scripts, and outputs for the paper "Bacterial and Immunological Mediators linking Caregiving with Metabolic Syndrome".
HTML
1
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