• Stars
    star
    1
  • Language
    R
  • Created 7 months ago
  • Updated 7 months ago

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Code associated with Cole et al. 2024

More Repositories

1

TRACERx-PHLEX

Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging
Shell
11
star
2

Etch-a-Cell-Nuclear-Envelope

Python
8
star
3

OmeSliCC

Ome(ro) SLide Image Conversion and Compression pipline (OmeSliCC)
Python
7
star
4

ActiveUnetSegmentation

Unet implementation to work with active contours for segmentations. Using keras and tensorflow 1.15 or 2.5.
Python
5
star
5

cbias-napari

Introduction to Napari training course
Jupyter Notebook
5
star
6

warpAnnotations

A tool to transform annotations (such as points, skeletons or meshes) between spatial datasets.
MATLAB
5
star
7

sparks

Jupyter Notebook
4
star
8

py-imcyto

IMC segmentation in python.
Jupyter Notebook
4
star
9

napari-tutorial

Modular course teaching the use of napari for image visualisation and analysis
4
star
10

PEACE_melanoma_14_paper

R
3
star
11

babs_uv_polymerase

Simulator of polymerase dynamics during UV damage and repair
Julia
3
star
12

network_borg_blog

Network Borg Blog - Resistance is futile *** Blog Edition - Not Maintained! ***
Python
3
star
13

image-analysis-outreach

A collection of materials and information for school outreach sessions about image analysis
2
star
14

IonVisualise

Python
2
star
15

spherical-phenotype-clustering

Python
2
star
16

Network_Automation_with_Nornir

Network Automation with Nornir
Python
2
star
17

plateplot

Python library for plotting microtitre plates in altair / vega-lite
Python
2
star
18

Making-Lab-Repositories

2
star
19

RAS84

Analysis code associated with the development of RAS84, a curated RAS transcriptional signature.
R
2
star
20

vanMaldegem_Valand_2021

Code associated with Van Maldegem & Valand et al. 2021, for the analysis of Imaging Mass Cytometry data
R
2
star
21

protocolBLAST

Sample preparation and warping accuracy for correlative multimodal imaging in the mouse olfactory bulb using two-photon, synchrotron X-ray and volume electron microscopy
Jupyter Notebook
2
star
22

Segment-Flow

Nextflow pipeline for deep learning segmentation models
Python
2
star
23

multi-dimensional-imaging-and-analysis

Jupyter Notebook
2
star
24

deep-imcyto

Nextflow pipeline for IMC segmentation tasks.
Python
2
star
25

tumour-growth-patterns-impact-evolution

Agent-based modelling reveals the impact of growth patterns on spatial and temporal features of clonal diversification. A GitHub repository of the Source Code for the model and Source Data for the figures of the paper.
Cuda
2
star
26

babs-pre-quarto

Pre-processor to produce parametrised Quarto websites
Makefile
1
star
27

dm3d-pages

Deforming mesh 3D usage.
1
star
28

Spherical_treadmill

C++
1
star
29

mitoem-challenge

Python
1
star
30

TRACERxIMCSpillover

Spillover plugins for TRACERx imaging mass cytometry data analysis, adapted from Chevrier et al 2018.
R
1
star
31

Lattke_et_al_Astrocyte_Maturation

R
1
star
32

DESdemonA

BABS template R script for processing bulk RNASeq data
R
1
star
33

MSTPump

Open source syringe pump
C++
1
star
34

pcr-lambda-test

Python
1
star
35

Electronics-Course-Material

Examples and course material
C++
1
star
36

RAS84_classification

R script to classify lung adenocarcinoma transcriptomes using RAS84 transcriptional signature SVM.
R
1
star
37

StepperController

Controller board for stepper motors
1
star
38

vhl_snRNAseq

Analysis code for VHL tumour snRNAseq datasets from TRACERx renal
R
1
star
39

4-Stepper-motor-control-board

Board to control 4 stepper motors based on the Teesny 3.5 dev. board. It has a small OLED display and 4 rotary encoders with switch and 2 DAC outputs in BNC connectors.
C++
1
star
40

babs_recruit_2021

Recruitment questions for 2021 vacancy
R
1
star
41

Tetrode_plater_breakout_board

1
star
42

CALM

Crick Advanced Light Microscopy
Jupyter Notebook
1
star
43

network-syslog-summary

Summarise syslog-ng format Cisco logs and graph count. Post results to Slack.
Python
1
star