There are no reviews yet. Be the first to send feedback to the community and the maintainers!
TrimGalore
A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS dataBismark
A tool to map bisulfite converted sequence reads and determine cytosine methylation statesSNPsplit
Allele-specific alignment sortingSherman
A simple Bisulfite FastQ Read Simulator (BiQRS)Umi-Grinder
The use of UMIs for sequencing becomes more and more frequently used so we need to take them into consideration when deduplicating data aligning to the same positionsreStrainingOrder
A little QC tool that attempts to predict the genotype of mouse samples used, based on prior knowledge of high-quality SNPs from the Mouse Genomes ProjectscRepeats
Custom script(s) for the processing of files for single-cell repeat analysisIMPLICON
A processing guide for IMPLICON data (bisulfite amplicon data for imprinted loci)BabrahamLinkON
Pipeline for processing VDJ-Seq dataLove Open Source and this site? Check out how you can help us