FelixKrueger/SNPsplit

Stars
44
Rank 634,578 (Top 13 %)
Language
Perl
License
GNU General Publi...
Created over 8 years ago
Updated almost 2 years ago

FelixKrueger/SNPsplit

FelixKrueger

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Allele-specific alignment sorting

TrimGalore

A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data

Bismark

A tool to map bisulfite converted sequence reads and determine cytosine methylation states

Sherman

A simple Bisulfite FastQ Read Simulator (BiQRS)

Umi-Grinder

The use of UMIs for sequencing becomes more and more frequently used so we need to take them into consideration when deduplicating data aligning to the same positions

reStrainingOrder

A little QC tool that attempts to predict the genotype of mouse samples used, based on prior knowledge of high-quality SNPs from the Mouse Genomes Project

scRepeats

Custom script(s) for the processing of files for single-cell repeat analysis

IMPLICON

A processing guide for IMPLICON data (bisulfite amplicon data for imprinted loci)

BabrahamLinkON

Pipeline for processing VDJ-Seq data

TrAEL-seq

A collection of software used for the TrAEL-seq manuscript