FelixKrueger/IMPLICON

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2
Language
Python
License
GNU General Publi...
Created over 4 years ago
Updated over 2 years ago

FelixKrueger/IMPLICON

FelixKrueger

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A processing guide for IMPLICON data (bisulfite amplicon data for imprinted loci)

TrimGalore

A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data

Bismark

A tool to map bisulfite converted sequence reads and determine cytosine methylation states

SNPsplit

Allele-specific alignment sorting

Sherman

A simple Bisulfite FastQ Read Simulator (BiQRS)

Umi-Grinder

The use of UMIs for sequencing becomes more and more frequently used so we need to take them into consideration when deduplicating data aligning to the same positions

reStrainingOrder

A little QC tool that attempts to predict the genotype of mouse samples used, based on prior knowledge of high-quality SNPs from the Mouse Genomes Project

scRepeats

Custom script(s) for the processing of files for single-cell repeat analysis

BabrahamLinkON

Pipeline for processing VDJ-Seq data

TrAEL-seq

A collection of software used for the TrAEL-seq manuscript