Discover FNNDSC/fyborg Open Source project by FNNDSC / BCH (@FNNDSC)

Python wrapper to interact with a PACS (based off DCMTK and PyDicom)

170

pypx

ChRIS_ui

UI for ChRIS

TypeScript

ChRIS_store_ui

UI for the ChRIS Store

Source for a slim Ubuntu-based Python3 image

ubuntu-python3

ChRIS_ultron_backEnd

Backend for ChRIS

Matlab Projects and Snippets

matlab

MATLAB

pman

A process management system written in python

CHRIS_docs

Documentation for CHRIS

Backend for ChRIS plugin apps store

ChRIS_store

AMI Viewer Polymer element

ami-viewer

pfcon

Data / Compute manager

chrisreloaded

Front end for ChRIS Ultron

ChRIS_ultron_frontEnd

Comparing energy efficiency of a Rust rewrite of a program for DICOM management.

pypx-repack-codecarbon-datalad

Standalone web-based medical data viewer

medview

A cookiecutter template for Chris app plugins

cookiecutter-chrisapp

Easiest way to run ChRIS locally.

miniChRIS-docker

Mono repo for FNNDSC's Javascript projects.

fnndsc

A reusable medical image javascript viewer

viewerjs

ami-loader

cube-design

All CUBE related designs

website-old

ChRIS Project Website

A swarm cluster manager based on the Python docker API

swarm

Inner cortical plate surface extraction using CIVET

pl-fetal-surface-extract

scripts

Various Scripts

KWWidgets migrated to git for ease

KWWidgets

C++

fetalMoco

Fetal Motion Reconstruction

C++

gcjs

Collaboration module based on Google Drive Realtime Api

Some handy utilities for working with TrackVis (*.trk) files

TrackVisUtilities

pl-infantfs

Infant FreeSurfer

File manager that implements file reading and saving operations on diverse cloud filesystems.

fmjs

DICOM receiver for ChRIS backend

oxidicom

Rust

cjs

the collaboration module!

The FNNDSC common library

_common

Multi-architecture docker images with Conda

conda-multiarch

dck-dicom-listener

Medical image viewer for mi2b2

mi2b2

A ChRIS DS plugin to convert from medical image data files to display-friendly formats (like png and jpg).

projectman

FNNDSC project manager

pl-med2img

Container images for poetry

data

python-poetry

Extends Playwright test to measure code coverage using Playwright's built-in features

fetal-brain-segmentation

Jupyter Notebook

playwright-test-coverage-native

Miscellaneous tcl packages -- command line interpreter, "class" analogue, tape device controller.

tcl_misc

Tcl

pfdo_med2image

Perform a med2image at multiple locations in a directory tree

tinycudann-docker-build

A quick "hack" plugin for freesurfer

pl-fshack

Extract surface meshes from in-utero MRI

pl-surfaces-fetus

Perl

python-chrisclient

A python client for the ChRIS API.

polyami

Polymer-styled AMI

mdh_apps

Medical Data Header Apps

gpu

GPU Coding

dmd2b

DICOM Meta Data DataBase

A dock around the dmd2b project

dmd2b-dock

dmd2b_web

An search program for DICOM database (next step : make the search dynamic)

FreeSurfer javascript related tools

fsjs

The nipypeWheels interface for easy pypelining..

wheels

Cortical surface extraction and calculation of cortical thickness. Process made using an initial deeplearning segmentations of GM and WM. It implements a method of homotopic skeletonizatios to find CSF in the sulcus and another method of soft clustering is implemented for intensity refinement of GM boundary.

cortical-thickness

A renderer window JS object to render and visualize medical images

rendererjs

meg.babymri.org

thbarjs

pl-freesurfer_simplereport

A ChRIS DS plugin that can generate a simple report (in several formats) of a FreeSurfer annotation/segmentation volume

Source for a slim Centos-based Python3 image

centos-python3

gridautomaton

Cellular Automaton Grid: Simulates cellular automaton evolution on simple grids

Python interface for basic MNI .obj file format. Supports read, write, and calculations on a vertex neighbor graph.

pybicpl

A reusable ChRIS utility JS library

chris-utils

Batteries-included template for Python ChRIS plugins.

python-chrisapp-template

A collection of wiki to deploy/access ChRIS services on Mass Open Cloud

ChRIS_on_MOC

fetal

The fetal atlas explorer based on Slice:Drop.

CSS

WebMeg.net

The web content for WebMeg.net/.org

delayedpuberty.babymri.org

Fetal brain reconstruction pipeline

Fetal_Brain_MRI_Reconstruction_Pipeline

pl-to31

Fetal brain MRI alignment using FSL FLIRT

The API specification of ChRIS

ChRIS_API

Run HPLOCONS in a container using Podman or Docker.

hplocons-wine

ChRIS python client built on aiohttp

aiochris

A DICOM instance handler for storescp which reorganizes incoming DICOM files for the pypx+pfdcm+ChRIS ecosystem.

pypx-listener

Rust

pfioh

Path File IO Handler

A "base" class module common to a family of DICOM processing.

pfdicom

Run ChRIS using Podman or Kubernetes

miniChRIS-podman

Convenience script to clone a github organization

cloneGHO

Determines centroid of cluster of points, and shaped areas-of-significance

centroid_cloud

Red Hat / BU / MOC collaboration page

ami-data

ChRIS_collab

Roff

cutl

ChRIS utility library in javascript

A stripped down ChRIS workflow that is used for testing crun remote scheduling and behaviour

cruntesting

Repo for collecting docs, help, etc to get new contribs up and helping with the ChRIS project

ChRIS_contributor-support

pman_fileio

REST API for file io in pman

pfurl

Path-File-URL client.

A FreeSurfer surface viewer based on XTK.

SurfView

An app to predict segmented brain MRI images from a given unsegmented brain MRI

C_utils

Simple C++ Utilities.

C++

pl-mricnn_predict

rav

web

pl-s3retrieve

A Chris 'ds' plugin to retrieve file/folders from Amazon S3 service.

Automatic masking of fetal brain images using deep learning

pl-fetal-brain-mask

The base module for Chris' plugins

babybrain

CSS

chrisapp

A chris plugin to identify and remove text from images

100

pl-image_textRemove