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Modeling is a really powerful tool to analyze physical problems. In engineering, some system behavior is not feasible to be achieved by experiments or the experiment is high cost which is not worthy to conduct. Therefore, modeling is a good choice for researcher to gain the preliminarily approximate results. Modeling is process to apply physical principles to corresponding systems to derive mathematical models. In this report, it demonstrates three different physical problems — Thermo-dynamics, Fluid-dynamics and Structural-dynamics. The methods and results of simulation for corresponding systems are shown in order to analyze the difference between methods