Emergent-Behaviors-in-Biology/species-packing-bound

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Emergent-Behaviors-in-Biology/species-packing-bound

Emergent-Behaviors-in-Biology

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Cavity method with linear resource dynamics

mlreview_notebooks

Notebooks for "A high bias low-variance introduction to Machine Learning for physicists."

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community-simulator

Simulate microbial community batch culture experiments.

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scTOP

A package for identifying cell phenotype from single-cell RNA-sequencing data.

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typical-random-ecosystems

This is the code accompanying the manuscript: Cui, Wenping, Robert Marsland III, and Pankaj Mehta. "Diverse communities behave like typical random ecosystems." arXiv:1904.02610 (2019).

crossfeeding-transition

Code and data to accompany Marsland et al. (2018) "Available energy fluxes drive a transition in the diversity, stability, and functional structure of microbial communities"

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microbiome-patterns

Scripts and data to accompany Marsland, Cui and Mehta "A minimal model for microbial biodiversity can reproduce experimentally observed ecological patterns," bioRxiv 622829 (2019)

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proj_push_pull

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metabolic-homology

Predict community composition in novel environments using metabolic homology

covid19

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