ElsevierSoftwareX/SOFTX_2018_112 ElsevierSoftwareX/SOFTX_2018_112

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azTotMD: software for Non-Constant Force Field Molecular Dynamics. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711018301389.

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Load Balanced 2D and 3D Adaptive Mesh Refinement in OpenFOAM. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711018301699.
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FEniCS mechanics: A package for continuum mechanics simulations. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711018300979.
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The Sound Design Toolkit. To cite this software publication: http://www.sciencedirect.com/science/article/pii/S2352711017300195
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MPSlib: a C++ class for Multiple-Point based sequential Simulation. To cite this software publication: http://www.sciencedirect.com/science/article/pii/S2352711016300164
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pycity_scheduling - A Python framework for the development and assessment of optimization-based power scheduling algorithms for multi-energy systems in city districts. To cite this Original Software Publication: https://www.sciencedirect.com/science/article/pii/S2352711021001230
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piv-image-generator: An image generating software package for planar PIV and Optical Flow benchmarking. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711020300339
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GDoeSII: Software for design of diffractive optical elements and conversion to GDSII lithography files. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711018302711.
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Short-Time Fourier Transform with the Window Size Fixed in the Frequency Domain (STFT-FD): Implementation. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711017300638
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The Openpipeflow Navier-Stokes Solver. To cite this software publication: http://www.sciencedirect.com/science/article/pii/S2352711017300158
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Particle Detection in VOF-Simulations with OpenFOAM. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S235271101930264X
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SoccER: Computer graphics meets sports analytics for soccer event recognition. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711020303253
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pyPcazip: a PCA-based Toolkit for Compression and Analysis of Molecular Simulation Data. To cite this software publication http://www.sciencedirect.com/science/article/pii/S2352711016300036
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movecost: An R package for calculating accumulated slope-dependent anisotropic cost-surfaces and least-cost paths. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711019302341.
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BANSHEE–A MATLAB Toolbox for Non-Parametric Bayesian Networks. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711020303010
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Gxsview: Geometry and cross section viewer for calculating radiation transport
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OWL2Go: Auto-generation of Go data models for OWL ontologies with integrated serialization and deserialization functionality.
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SOFTX-D-17-00067

AudExpCreator: A GUI-Based Matlab Tool for Designing and Creating Auditory Experiments with the Psychophysics Toolbox. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711018301985
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SOFTX-D-17-00081

A New Algorithm in Singular Spectrum Analysis Framework: the Overlap-SSA (ov-SSA). To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711017300596
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GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers. To cite this software publication: http://www.sciencedirect.com/science/article/pii/S2352711015000059
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aaA NetCDF version of two-dimensional energy balance climate model based on the full multigrid method in FORTRAN. To cite this software publication: http://www.sciencedirect.com/science/article/pii/S2352711017300262
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Takin: An open-source software for experiment planning, visualisation, and data analysis. To cite this software publication: http://www.sciencedirect.com/science/article/pii/S2352711016300152
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Automatic Multifaceted Matlab Package for Analysis of Ocular Images (AMPAO). To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711019301852
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XaNSoNS: GPU-accelerated simulator of diffraction patterns of nanoparticles. To cite this software publication: http://www.sciencedirect.com/science/article/pii/S2352711017300043
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An algorithm to detect and characterize transient events in gravitational-wave detectors. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711020303332
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vkpolybench: a crossplatform Vulkan Compute port of the PolyBench/GPU benchmark suite. To cite this Original Software Publication: https://www.sciencedirect.com/science/article/pii/S2352711021000996
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R functions for generating gridded biodiversity maps from point (incidence) data. To cite this software publication: http://www.sciencedirect.com/science/article/pii/S2352711015000126
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Magpylib: A free Python package for magnetic field computation. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711020300170
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SpharaPy: A Python toolbox for spatial harmonic analysis of non-uniformly sampled data. To cite this software publication:https://www.sciencedirect.com/science/article/pii/S2352711019301670
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CMIP6-D&A: An R-based software for processing climate data available in network common data format. To cite this Original Software Publication: https://www.sciencedirect.com/science/article/pii/S2352711022000395
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A software companion for compressively sensed time-frequency processing of sparse nonstationary signals. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711017300365
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SOFTX-D-20-00046

FLUBIO - An unstructured, parallel, finite-volume based Navier-Stokes and convection-diffusion like equations solver for teaching and research purposes
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SEDBYS: A python-based SED Builder for Young Stars. To cite this Original Software Publication: https://www.sciencedirect.com/science/article/pii/S2352711021000327
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SHEMAT-Suite: an open-source code for simulating flow, heat and species transport in porous media. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711020301357
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A MATLAB Package for Automatic Extraction of Flow Index in OCT-A images by Intelligent Vessel Manipulation. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711020300364
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SRC_Num_TDOA: Multiple speech sources’ number and their TDOA Estimation from a stereo recorded mixture. To cite this software publication: http://www.sciencedirect.com/science/article/pii/S2352711016300322
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SOFTX-D-16-00058

WheelerLab is an interactive program that facilitates the interpretation of stratigraphic data. To cite this software publication: http://www.sciencedirect.com/science/article/pii/S2352711016300401
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NetCausality: A time-delayed neural network tool for causality detection and analysis. To cite this Original Software Publication: https://www.sciencedirect.com/science/article/pii/S2352711021000893
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FonaDyn - a system for real-time analysis of the electroglottogram, over the voice range. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S235271101830030X
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SOFTX-D-16-00054

TauFactor is a MatLab applications for calculating the tortuosity factor, as well as volume fractions, surface areas and triple phase boundary densities, from image based microstructural data. To cithe this software publication: http://www.sciencedirect.com/science/article/pii/S2352711016300280
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SOFTX_2019_1_5_6

jDSSAT: A JavaScript Module for DSSAT-CSM integration. To cite this software publication:
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SOFTX-D-21-00026

Open Source Vector Field Topology. To cite this Original Software Publication: https://www.sciencedirect.com/science/article/pii/S2352711021000960
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Software AgDataBox-Map to Precision Agriculture Management. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711019300275.
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SOFTX_2018_117

MC-BAM: Moment–curvature analysis for beams with advanced materials. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711018301432.
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SOFTX_2018_149

cp-tools: A python library for predicting heat capacity of crystalline substances. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711018301791
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ContHeart: software for monitoring isolated cardiomyocyte shortening. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711019303826
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SOFTX-D-20-00048

PCAfold: Python software to generate, analyze and improve PCA-derived low-dimensional manifolds. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711020303435
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A computer program TRACK_P for studying proton tracks in PADC detectors. To cite this software publication: http://www.sciencedirect.com/science/article/pii/S2352711016300073
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SOFTX_2019_35

Processing tool for X-ray Photoelectron Spectroscopy Data. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711019300378.
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SOFTX_2019_330

Praznik: High performance information-based feature selection. To cite this Original Software Publication: https://www.sciencedirect.com/science/article/pii/S2352711021001138
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SOFTX-D-17-00020

MicroFract: An image based code for microstructural crack path prediction. To cite this software publication: http://www.sciencedirect.com/science/article/pii/S2352711017300092
MATLAB
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SOFTX-D-21-00154

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SOFTX_2018_142

ChessY: A Mathematica toolbox for the generation, visualization and analysis of positional chess graphs. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711018301687.
Mathematica
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SOFTX-D-15-00007

Chaostest: computing the largest Lyapunov exponent and testing for the presence of a chaotic dynamics in a noisy scalar series. To cite this software publication: http://www.sciencedirect.com/science/article/pii/S2352711015000096
MATLAB
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SOFTX_2018_109

Niget: Nanoindentation General Evaluation Tool. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711018301353.
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SOFTX_2018_28

Bedforms-ATM, an open source software to analyze the scale-based hierarchies and dimensionality of natural bed forms. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711018300451
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SOFTX_2020_75

DIETERpy: a Python framework for The Dispatch and Investment Evaluation Tool with Endogenous Renewables. To cite this Original Software Publication: https://www.sciencedirect.com/science/article/pii/S2352711021000947
GAMS
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TimeAwareBPMN-js: An Editor and Temporal Verification Tool for Time-Aware BPMN Processes. To cite this Original Software Publication: https://www.sciencedirect.com/science/article/pii/S2352711021001734
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SOFTX-D-21-00010

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SOFTX_2018_209

A Corpus Platform on Indonesian Academic Language. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711018302413.
Roff
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SOFTX-D-16-00189

IR Defect Detector is a MatLab based application for computer aided detection and evaluation of selected parameters of subsurface defects in materials
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SOFTX-D-20-00100

EPT: An R package for ensemble patch transform
R
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SOFTX_2020_149

Pmlbeta: a PyMOL extension for building Ξ²-amino acid insertions and Ξ²-peptide sequences. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711020303678
Python
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SOFTX-D-20-00104

TFMLAB: a MATLAB toolbox for 4D multicellular traction force microscopy. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711021000625
MATLAB
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78

SOFTX-D-21-00153

CSTNU Tool: A Java Library for Checking Temporal Networks. To cite this Original Software Publication: https://www.sciencedirect.com/science/article/pii/S2352711021001564
Java
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SOFTX_2018_56

dotCall64: An R package providing an efficient interface to compiled C, C++, and Fortran code supporting long vectors. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711018300785.
R
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SOFTX-D-15-00066

tgcd: An R package for analyzing thermoluminescence glow curves. To cite this software publication: http://www.sciencedirect.com/science/article/pii/S2352711016300140
Fortran
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SOFTX-D-16-00061

A browser-based tool for conversion between Fortran NAMELIST and XML/HTML. To cite this software publication: http://www.sciencedirect.com/science/article/pii/S235271101630036X
HTML
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SOFTX-D-16-00157

Time frequency analysis using recursive filter banks and time frequency reassignment.
C++
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SOFTX_2020_238

GstLAL: A software framework for gravitational wave discovery
Python
1
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SOFTX_2020_160

coherent Waveburst, a pipeline for unmodeled gravitational-wave data analysis. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711021000236
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SOFTX-D-20-00075-

SEDBYS: A python-based SED Builder for Young Stars
Python
1
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86

SOFTX_2019_12

NEMO: A Flexible and Highly Scalable Network EMulatOr. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711019300135
Java
1
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SOFTX_2018_244

DPsim - A Dynamic Phasor Real-Time Simulator for Power Systems. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711018302760
C++
1
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SOFTX_2018_69

Workflow and tools to track and visualize behavioural data from a Virtual Reality environment using a lightweight GIS. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711018300931.
JavaScript
1
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SOFTX-D-16-00095

Sepand X-Ray Inspector (SXI) is a graphic user interface (GUI) of the control and image visualization software.
C++
1
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SOFTX-D-21-00009

MATLAB
1
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91

SOFTX-D-21-00142

MicroVIP: Microscopy image simulation on the Virtual Imaging Platform. To cite this Original Software Publication: https://www.sciencedirect.com/science/article/pii/S235271102100131X
MATLAB
1
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92

SOFTX-D-16-00182

Compressive sensing is a computational framework for acquisition and processing of sparse signals at sampling rates below the rates mandated by the Nyquist sampling theorem.
MATLAB
1
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93

SOFTX_2018_174

Field Animation. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S235271101830205X
Python
1
star
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SOFTX-D-21-00236

MATLAB
1
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95

SOFTX-D-22-00113

Kotlin
1
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96

SOFTX-D-21-00148

pyFIRI - a free and open source Python software package of the non-auroral Earth’s lower ionosphere. To cite this Original Software Publication: https://www.sciencedirect.com/science/article/pii/S2352711021001461
Python
1
star
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SOFTX_2019_144

DPClusSBO: An integrated software for clustering of simple and bipartite graphs.
1
star
98

SOFTX_2020_278

rheed++: A C++ framework to simulation of RHEED intensity oscillations during the growth of thin epitaxial films. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S235271102030306X
C++
1
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99

SOFTX-D-20-00038

ASVtorch Toolkit: Speaker Verification with Deep-Neural Networks. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S235271102100042X
Python
1
star
100

SOFTX_2020_155

advligorts: The Advanced LIGO Real-Time Digital Control and Data Acquisition System. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711020303320
C
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