Discover ElsevierSoftwareX/SOFTX-D-20-00058 Open Source project

FEniCS mechanics: A package for continuum mechanics simulations. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711018300979.

SOFTX_2018_73

The Sound Design Toolkit. To cite this software publication: http://www.sciencedirect.com/science/article/pii/S2352711017300195

SOFTX-D-16-00016

Max

SOFTX-D-16-00042

MPSlib: a C++ class for Multiple-Point based sequential Simulation. To cite this software publication: http://www.sciencedirect.com/science/article/pii/S2352711016300164

SOFTX-D-20-00087

pycity_scheduling - A Python framework for the development and assessment of optimization-based power scheduling algorithms for multi-energy systems in city districts. To cite this Original Software Publication: https://www.sciencedirect.com/science/article/pii/S2352711021001230

piv-image-generator: An image generating software package for planar PIV and Optical Flow benchmarking. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711020300339

SOFTX_2020_33

GDoeSII: Software for design of diffractive optical elements and conversion to GDSII lithography files. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711018302711.

SOFTX_2018_239

MATVines: A Vine Copula Package for MATLAB. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711021000455

SOFTX-D-21-00039

Pre-processing software program to view, analyse, change and fix errors present in SEG-Y data files. To cite this software publication: http://www.sciencedirect.com/science/article/pii/S2352711017300031

SOFTX-D-16-00019

SOFTX-D-17-00087

Short-Time Fourier Transform with the Window Size Fixed in the Frequency Domain (STFT-FD): Implementation. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711017300638

The Openpipeflow Navier-Stokes Solver. To cite this software publication: http://www.sciencedirect.com/science/article/pii/S2352711017300158

SOFTX-D-17-00015

PyTOPS: A Python based tool for TOPSIS. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711018302279

SOFTX_2018_196

Particle Detection in VOF-Simulations with OpenFOAM. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S235271101930264X

SOFTX_2019_260

SOFTX-D-15-00049

iamxt: Max-tree Toolbox for Image Processing and Analysis . To cite this software publication: http://www.sciencedirect.com/science/article/pii/S2352711017300079

SoccER: Computer graphics meets sports analytics for soccer event recognition. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711020303253

SOFTX-D-20-00016

SOFTX-D-15-00082

pyPcazip: a PCA-based Toolkit for Compression and Analysis of Molecular Simulation Data. To cite this software publication http://www.sciencedirect.com/science/article/pii/S2352711016300036

movecost: An R package for calculating accumulated slope-dependent anisotropic cost-surfaces and least-cost paths. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711019302341.

SOFTX_2019_230

SOFTX_2020_243

BANSHEE–A MATLAB Toolbox for Non-Parametric Bayesian Networks. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711020303010

SOFTX_2020_46

Gxsview: Geometry and cross section viewer for calculating radiation transport

Makefile

SOFTX_2020_76

OWL2Go: Auto-generation of Go data models for OWL ontologies with integrated serialization and deserialization functionality.

SOFTX-D-17-00067

AudExpCreator: A GUI-Based Matlab Tool for Designing and Creating Auditory Experiments with the Psychophysics Toolbox. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711018301985

A New Algorithm in Singular Spectrum Analysis Framework: the Overlap-SSA (ov-SSA). To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711017300596

SOFTX-D-17-00081

GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers. To cite this software publication: http://www.sciencedirect.com/science/article/pii/S2352711015000059

SOFTX-D-15-00003

SOFTX-D-16-00023

aaA NetCDF version of two-dimensional energy balance climate model based on the full multigrid method in FORTRAN. To cite this software publication: http://www.sciencedirect.com/science/article/pii/S2352711017300262

Takin: An open-source software for experiment planning, visualisation, and data analysis. To cite this software publication: http://www.sciencedirect.com/science/article/pii/S2352711016300152

SOFTX-D-16-00031

Automatic Multifaceted Matlab Package for Analysis of Ocular Images (AMPAO). To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711019301852

SOFTX_2019_182

XaNSoNS: GPU-accelerated simulator of diffraction patterns of nanoparticles. To cite this software publication: http://www.sciencedirect.com/science/article/pii/S2352711017300043

SOFTX-D-16-00083

An algorithm to detect and characterize transient events in gravitational-wave detectors. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711020303332

SOFTX_2020_128

vkpolybench: a crossplatform Vulkan Compute port of the PolyBench/GPU benchmark suite. To cite this Original Software Publication: https://www.sciencedirect.com/science/article/pii/S2352711021000996

SOFTX_2020_86

R functions for generating gridded biodiversity maps from point (incidence) data. To cite this software publication: http://www.sciencedirect.com/science/article/pii/S2352711015000126

SOFTX-D-15-00013

SOFTX_2020_17

Magpylib: A free Python package for magnetic field computation. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711020300170

SpharaPy: A Python toolbox for spatial harmonic analysis of non-uniformly sampled data. To cite this software publication:https://www.sciencedirect.com/science/article/pii/S2352711019301670

SOFTX_2019_164

Mcfly: Automated deep learning on time series. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711019300202

SOFTX_2019_19

CMIP6-D&A: An R-based software for processing climate data available in network common data format. To cite this Original Software Publication: https://www.sciencedirect.com/science/article/pii/S2352711022000395

SOFTX_2020_140

SOFTX-D-16-00055

Baseliner: An open-source, interactive tool for processing sap flux data from thermal dissipation probes. To cite this software publication: http://www.sciencedirect.com/science/article/pii/S2352711016300188

azTotMD: software for Non-Constant Force Field Molecular Dynamics. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711018301389.

SOFTX_2018_112

A software companion for compressively sensed time-frequency processing of sparse nonstationary signals. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711017300365

SOFTX-D-16-00102

FLUBIO - An unstructured, parallel, finite-volume based Navier-Stokes and convection-diffusion like equations solver for teaching and research purposes

SOFTX-D-20-00046

SOFTX_2020_38

GSGP-CUDA - a CUDA framework for Geometric Semantic Genetic Programming

HTML

SOFTX-D-20-00075

SEDBYS: A python-based SED Builder for Young Stars. To cite this Original Software Publication: https://www.sciencedirect.com/science/article/pii/S2352711021000327

SHEMAT-Suite: an open-source code for simulating flow, heat and species transport in porous media. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711020301357

SOFTX_2020_135

A MATLAB Package for Automatic Extraction of Flow Index in OCT-A images by Intelligent Vessel Manipulation. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711020300364

SOFTX_2020_36

SRC_Num_TDOA: Multiple speech sources’ number and their TDOA Estimation from a stereo recorded mixture. To cite this software publication: http://www.sciencedirect.com/science/article/pii/S2352711016300322

SOFTX-D-15-00080

XAMG: A library for solving linear systems with multiple right-hand side vectors. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711021000406

SOFTX-D-21-00014

WheelerLab is an interactive program that facilitates the interpretation of stratigraphic data. To cite this software publication: http://www.sciencedirect.com/science/article/pii/S2352711016300401

SOFTX-D-16-00058

NetCausality: A time-delayed neural network tool for causality detection and analysis. To cite this Original Software Publication: https://www.sciencedirect.com/science/article/pii/S2352711021000893

SOFTX-D-20-00005

FonaDyn - a system for real-time analysis of the electroglottogram, over the voice range. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S235271101830030X

SOFTX-D-17-00078

SuperCollider

SOFTX-D-16-00054

TauFactor is a MatLab applications for calculating the tortuosity factor, as well as volume fractions, surface areas and triple phase boundary densities, from image based microstructural data. To cithe this software publication: http://www.sciencedirect.com/science/article/pii/S2352711016300280

SOFTX_2019_1_5_6

jDSSAT: A JavaScript Module for DSSAT-CSM integration. To cite this software publication:

Open Source Vector Field Topology. To cite this Original Software Publication: https://www.sciencedirect.com/science/article/pii/S2352711021000960

SOFTX-D-21-00026

Software AgDataBox-Map to Precision Agriculture Management. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711019300275.

SOFTX_2019_26

Java

SOFTX_2018_117

MC-BAM: Moment–curvature analysis for beams with advanced materials. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711018301432.

cp-tools: A python library for predicting heat capacity of crystalline substances. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711018301791

SOFTX_2018_149

ContHeart: software for monitoring isolated cardiomyocyte shortening. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711019303826

SOFTX_2019_373

Visual Basic .NET

SOFTX-D-20-00048

PCAfold: Python software to generate, analyze and improve PCA-derived low-dimensional manifolds. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711020303435

The EKF-AUS-NL algorithm implemented without the linear tangent model and in presence of parametric model error. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711018300025

SOFTX-D-17-00068

DEIP, Discontinuous Element Insertion Program - Mesh Generation for Interfacial Finite Element Modeling. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711018300797

SOFTX-D-17-00085

A computer program TRACK_P for studying proton tracks in PADC detectors. To cite this software publication: http://www.sciencedirect.com/science/article/pii/S2352711016300073

SOFTX-D-15-00053

Processing tool for X-ray Photoelectron Spectroscopy Data. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711019300378.

SOFTX_2019_35

SOFTX_2019_330

Praznik: High performance information-based feature selection. To cite this Original Software Publication: https://www.sciencedirect.com/science/article/pii/S2352711021001138

SOFTX-D-17-00020

MicroFract: An image based code for microstructural crack path prediction. To cite this software publication: http://www.sciencedirect.com/science/article/pii/S2352711017300092

PyDDRBG: A Python framework for benchmarking and evaluating static and dynamic multimodal optimization methods. To cite this Original Software Publication: https://www.sciencedirect.com/science/article/pii/S2352711021001850

SOFTX-D-21-00154

ChessY: A Mathematica toolbox for the generation, visualization and analysis of positional chess graphs. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711018301687.

SOFTX_2018_142

Mathematica

SOFTX-D-15-00007

Chaostest: computing the largest Lyapunov exponent and testing for the presence of a chaotic dynamics in a noisy scalar series. To cite this software publication: http://www.sciencedirect.com/science/article/pii/S2352711015000096

A code for performing analytic continuation of fermionic Green's functions and self-energies as well as bosonic susceptibilities on a graphics processing unit (GPU). To cite this software publication: http://www.sciencedirect.com/science/article/pii/S2352711016300243

SOFTX-D-16-00025

Cuda

SOFTX_2018_109

Niget: Nanoindentation General Evaluation Tool. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711018301353.

SOFTX_2018_28

Bedforms-ATM, an open source software to analyze the scale-based hierarchies and dimensionality of natural bed forms. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711018300451

DIETERpy: a Python framework for The Dispatch and Investment Evaluation Tool with Endogenous Renewables. To cite this Original Software Publication: https://www.sciencedirect.com/science/article/pii/S2352711021000947

SOFTX_2020_75

GAMS

SOFTX-D-21-00180

TimeAwareBPMN-js: An Editor and Temporal Verification Tool for Time-Aware BPMN Processes. To cite this Original Software Publication: https://www.sciencedirect.com/science/article/pii/S2352711021001734

pyPOCQuant - A tool to automatically quantify Point-Of-Care Tests from images. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711021000558

SOFTX-D-21-00010

HTML

SOFTX_2018_209

A Corpus Platform on Indonesian Academic Language. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711018302413.

Roff

SOFTX-D-16-00189

IR Defect Detector is a MatLab based application for computer aided detection and evaluation of selected parameters of subsurface defects in materials

SOFTX-D-20-00100

EPT: An R package for ensemble patch transform

SOFTX_2020_149

Pmlbeta: a PyMOL extension for building β-amino acid insertions and β-peptide sequences. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711020303678

TFMLAB: a MATLAB toolbox for 4D multicellular traction force microscopy. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711021000625

SOFTX-D-20-00104

CSTNU Tool: A Java Library for Checking Temporal Networks. To cite this Original Software Publication: https://www.sciencedirect.com/science/article/pii/S2352711021001564

SOFTX-D-21-00153

Java

SOFTX_2018_56

dotCall64: An R package providing an efficient interface to compiled C, C++, and Fortran code supporting long vectors. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711018300785.

SOFTX-D-15-00066

tgcd: An R package for analyzing thermoluminescence glow curves. To cite this software publication: http://www.sciencedirect.com/science/article/pii/S2352711016300140

A browser-based tool for conversion between Fortran NAMELIST and XML/HTML. To cite this software publication: http://www.sciencedirect.com/science/article/pii/S235271101630036X

SOFTX-D-16-00061

HTML

SOFTX-D-16-00157

Time frequency analysis using recursive filter banks and time frequency reassignment.

GstLAL: A software framework for gravitational wave discovery

SOFTX_2020_238

coherent Waveburst, a pipeline for unmodeled gravitational-wave data analysis. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711021000236

SOFTX_2020_160

SOFTX-D-20-00075-

SEDBYS: A python-based SED Builder for Young Stars

NEMO: A Flexible and Highly Scalable Network EMulatOr. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711019300135

SOFTX_2019_12

Java

SOFTX_2018_244

DPsim - A Dynamic Phasor Real-Time Simulator for Power Systems. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711018302760

Workflow and tools to track and visualize behavioural data from a Virtual Reality environment using a lightweight GIS. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711018300931.

SOFTX_2018_69

Sepand X-Ray Inspector (SXI) is a graphic user interface (GUI) of the control and image visualization software.

SOFTX-D-16-00095

SOFTX-D-21-00009

MicroVIP: Microscopy image simulation on the Virtual Imaging Platform. To cite this Original Software Publication: https://www.sciencedirect.com/science/article/pii/S235271102100131X

SOFTX-D-21-00142

Compressive sensing is a computational framework for acquisition and processing of sparse signals at sampling rates below the rates mandated by the Nyquist sampling theorem.

SOFTX-D-16-00182

Field Animation. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S235271101830205X

SOFTX_2018_174

SOFTX-D-21-00236

pyFIRI - a free and open source Python software package of the non-auroral Earth’s lower ionosphere. To cite this Original Software Publication: https://www.sciencedirect.com/science/article/pii/S2352711021001461

SOFTX-D-22-00113

Kotlin

SOFTX-D-21-00148

DPClusSBO: An integrated software for clustering of simple and bipartite graphs.

SOFTX_2019_144

SOFTX_2020_278

rheed++: A C++ framework to simulation of RHEED intensity oscillations during the growth of thin epitaxial films. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S235271102030306X

ASVtorch Toolkit: Speaker Verification with Deep-Neural Networks. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S235271102100042X

SOFTX-D-20-00038