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GTDBTk
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.CheckM
Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomesgtdb-species-clusters
Toolkit for establishing, updating, and validating GTDB species clustersBamM
Metagenomics-focused BAM file manipulationGTDBNCBI
The GTDB provides the software infrastructure for working with a large collection of genomic resources. The major goal of this initiative is to provide a phylogenetically consistent taxonomy for archaea and bacteria.gtdb-itol-decorate
Creates iTOL files for tree decoration, given a set of GTDB genomes.Mannotator
Microbial annotation pipeline - in progressFrankenQIIME
Feel the Frankenbasespace_project_downloader
Download project fastq files from BaseSpacegtdb.ecogenomic.org
https://gtdb.ecogenomic.org/ScaffoldM
scaffoldmace-guix
GNU Guix package definitions for ACE or otherwisemingle
Australian Centre for Ecogenomics' genome tree database: Taxonomically annotated trees from HMMs and BLASTapi.gtdb.ecogenomic.org
https://api.gtdb.ecogenomic.org/ace-cluster-orchestrator
A template for distributing jobs across the ACE cluster.gtdb-migration-tk
Toolkit for updating the GTDB to the next release and test datagtdb-release-tk
Toolkit for updating the GTDB to the next release and generating data files for the GTDB website.slamM
slamM: a hybrid metagenomic assembly pipelinebioscripts
A collection of scripts written by ACE membersPhylogeneticM
Feed the tree...hatchet
Tools used to split the GTDB-Tk reference tree into smaller sub treesLove Open Source and this site? Check out how you can help us