Discover EBIvariation/eva-v2 Open Source project

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Java
License
Apache License 2.0
Created about 9 years ago
Updated over 8 years ago

EBIvariation

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This repository has now been split for better modularization. Please see eva-pipeline (develop branch), eva-tools and eva-ws.

vcf-validator

Validation suite for Variant Call Format (VCF) files, implemented using C++11

130

CMAT

ClinVar Mapping and Annotation Toolkit

Jupyter Notebook

eva-ws

European Variation Archive REST web services API

Java

variant-remapping

The pipeline for remapping VCF variants between two arbitrary FASTA assemblies.

Python

eva-pipeline

Genomic variation pipeline for the European Variation Archive, implemented using Spring Batch

Java

eva-web

Web front-end for the European Variation Archive

JavaScript

examples

Examples to be used as reference in other projects

Java

contig-alias

Service to provide synonyms of chromosome/contig identifiers

Java

eva-accession

EVA non-human variant accessioning service

Java

variation-commons

Library of core components used by multiple EBI Variation projects

Java

trait-curation

A web application for manual curation of trait-to-ontology mappings, including provenance and integration with EBI SPOT stack.

Python

metadata-ws

Generic REST API for submission metadata objects (usable by AMP T2D, EGA and EVA)

Java

eva-submission

Components that connect and automate main tasks in the EVA submission workflow

Python

eva-tools

Tools compatible with the infrastructure of the European Variation Archive pipeline

Java

eva-assembly-ingestion

Automation for ingesting a new assembly for a species

Python

eva-seqcol

Java implementation of the sequence collection specification to represent INSDC assemblies

Java

opentargets-pharmgkb

Pipeline to provide evidence strings for Open Targets from PharmGKB

Jupyter Notebook

EBIvariation/eva-v2

EBIvariation

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