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HistomicsTK
A Python toolkit for pathology image analysis algorithms.digital_slide_archive
The official deployment of the Digital Slide Archive and HistomicsTK.tifftools
Pure Python tools for reading and writing all TIFF IFDs, sub-IFDs, and tags.CNNCellDetection
This repository contains adaptations of the state-of-the-art deep learning based object detection models for the detection of cell nuclei in histology imagesHistomicsStream
A whole-slide image reader for TensorFlowDSA-WSI-DeID
A workflow for redacting PHI from whole slide images (WSI) based on the Digital Slide Archive.digitalslidearchive.info
Documentation for installing and maintaining the Digital Slide Archive, Girder, and HistomicsTKImageDePHI
ALBench
Benchmarking tool for evaluating Active Learning strategies for machine learningHistomicsDetect
A package for cell detection models using TensorFlowwsi-superpixel-guided-labeling
annotation-tracker
A Girder plugin for annotation tracking in HistomicsUIsuperpixel-classification
A test cli for classifying superpixels with arbitrary labelsimport-tracker
A Girder plugin for data import tracking in HistomicsUIlarge_image_source_isyntax
A large_image source using the Philips library for isyntax filesgirder_volview
large-image-utilities
Experimental utilities for use with large_imageansible-role-vips
Ansible role to install VIPS image processing softwaredsa_girder_webix_base_viewer
This is a Webix Based Viewing application template for the DSA that uses Girder APIImageDePHI-Phase-I
Whole Slide Image Deidentification for PHILove Open Source and this site? Check out how you can help us