DigitalSlideArchive/HistomicsStream

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Python
License
Apache License 2.0
Created about 4 years ago
Updated 4 days ago

DigitalSlideArchive/HistomicsStream

DigitalSlideArchive

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A whole-slide image reader for TensorFlow

HistomicsTK

A Python toolkit for pathology image analysis algorithms.

digital_slide_archive

The official deployment of the Digital Slide Archive and HistomicsTK.

HistomicsUI

A Girder plugin for pathology image annotations and analysis.

tifftools

Pure Python tools for reading and writing all TIFF IFDs, sub-IFDs, and tags.

CNNCellDetection

This repository contains adaptations of the state-of-the-art deep learning based object detection models for the detection of cell nuclei in histology images

DSA-WSI-DeID

A workflow for redacting PHI from whole slide images (WSI) based on the Digital Slide Archive.

digitalslidearchive.info

Documentation for installing and maintaining the Digital Slide Archive, Girder, and HistomicsTK

Jupyter Notebook

ImageDePHI

ALBench

Benchmarking tool for evaluating Active Learning strategies for machine learning

HistomicsDetect

A package for cell detection models using TensorFlow

wsi-superpixel-guided-labeling

annotation-tracker

A Girder plugin for annotation tracking in HistomicsUI

superpixel-classification

A test cli for classifying superpixels with arbitrary labels

import-tracker

A Girder plugin for data import tracking in HistomicsUI

large_image_source_isyntax

A large_image source using the Philips library for isyntax files

girder_volview

large-image-utilities

Experimental utilities for use with large_image

ansible-role-vips

Ansible role to install VIPS image processing software

dsa_girder_webix_base_viewer

This is a Webix Based Viewing application template for the DSA that uses Girder API

Jupyter Notebook

ImageDePHI-Phase-I

Whole Slide Image Deidentification for PHI