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HistomicsTK
A Python toolkit for pathology image analysis algorithms.digital_slide_archive
The official deployment of the Digital Slide Archive and HistomicsTK.HistomicsUI
A Girder plugin for pathology image annotations and analysis.tifftools
Pure Python tools for reading and writing all TIFF IFDs, sub-IFDs, and tags.CNNCellDetection
This repository contains adaptations of the state-of-the-art deep learning based object detection models for the detection of cell nuclei in histology imagesHistomicsStream
A whole-slide image reader for TensorFlowDSA-WSI-DeID
A workflow for redacting PHI from whole slide images (WSI) based on the Digital Slide Archive.digitalslidearchive.info
Documentation for installing and maintaining the Digital Slide Archive, Girder, and HistomicsTKImageDePHI
HistomicsDetect
A package for cell detection models using TensorFlowwsi-superpixel-guided-labeling
annotation-tracker
A Girder plugin for annotation tracking in HistomicsUIsuperpixel-classification
A test cli for classifying superpixels with arbitrary labelsimport-tracker
A Girder plugin for data import tracking in HistomicsUIlarge_image_source_isyntax
A large_image source using the Philips library for isyntax filesgirder_volview
large-image-utilities
Experimental utilities for use with large_imageansible-role-vips
Ansible role to install VIPS image processing softwaredsa_girder_webix_base_viewer
This is a Webix Based Viewing application template for the DSA that uses Girder APIImageDePHI-Phase-I
Whole Slide Image Deidentification for PHILove Open Source and this site? Check out how you can help us