DavisLaboratory/NK_scoring

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MIT License
Created over 6 years ago
Updated over 5 years ago

DavisLaboratory/NK_scoring

DavisLaboratory

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singscore

An R/Bioconductor package that implements a single-sample molecular phenotyping approach

vissE

An R/Bioconductor package to identify higher-order molecular phenotypes

msImpute

Methods for label-free mass spectrometry proteomics

dcanr

Differential co-expression/association network analysis

scDECAF

Reference-free celltype and phenotype annotation in single cell RNAseq by learning geneset representations

PySingscore

standR

Spatial transcriptomics analyses and decoding in R

GenesetAnalysisWorkflow

Combinatorial_miRNAs

A collection of scripts associated with the manuscript Cursons et al (2017) - Post-transcriptional control of EMT is coordinated through distributed, combinatorial targeting by multiple microRNAs

emtdata

peptide-protonet

Embedding MS1 peptide features and identification transfer

mastR

An R package for automatically screening cell type signature in specific tissue/organ/cancer.

SimulatorGRN

oppar

Outlier Profile and Pathway Analysis in R

SingscoreAMLMutations

Db_Compare

Compares the databases Reactome, KEGG, HPRD, WikiPathways and PhosphoSitePlus on their coverage of phospho/proteomic data.

Jacquelot_2021_reproducibility

Source code and application note for ILC2 classifier developed in Jacquelot et al., 2021

prosperiti

Protein network significance permutation testing