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singscore
An R/Bioconductor package that implements a single-sample molecular phenotyping approachvissE
An R/Bioconductor package to identify higher-order molecular phenotypesNK_scoring
msImpute
Methods for label-free mass spectrometry proteomicsdcanr
Differential co-expression/association network analysisscDECAF
Reference-free celltype and phenotype annotation in single cell RNAseq by learning geneset representationsPySingscore
standR
Spatial transcriptomics analyses and decoding in RGenesetAnalysisWorkflow
Combinatorial_miRNAs
A collection of scripts associated with the manuscript Cursons et al (2017) - Post-transcriptional control of EMT is coordinated through distributed, combinatorial targeting by multiple microRNAsemtdata
peptide-protonet
Embedding MS1 peptide features and identification transfermastR
An R package for automatically screening cell type signature in specific tissue/organ/cancer.SimulatorGRN
oppar
Outlier Profile and Pathway Analysis in RSingscoreAMLMutations
Jacquelot_2021_reproducibility
Source code and application note for ILC2 classifier developed in Jacquelot et al., 2021prosperiti
Protein network significance permutation testingLove Open Source and this site? Check out how you can help us