Discover DarwinAwardWinner/with-simulated-input Open Source project

Emacs daemon mode that plays nice with Mac OS.

242

mac-pseudo-daemon

A script for adding replaygain tags to music files

rganalysis

Reproducible reanalysis of a combined ChIP-Seq & RNA-Seq data set

CD4-csaw

ido-yes-or-no

Use ido to answer yes or no questions.

A command-line dice-rolling simulator for RPGs

roll

Modify environment variables in a running screen or tmux session

screen-sendenv

Simplified timer management for Emacs Lisp

emacs-named-timer

Alternate completing-read-multiple that uses completing-read

crm-custom

Transfer and transcode your music at the same time

transfercoder

My Emacs configuration (contents of ~/.emacs.d/)

dotemacs

Automate common sam & bam conversions

mergesam

git-custom-commands

My extra github commands

Download your subscribed videos from Youtube

download-youtube-subscriptions

Shell

ido-complete-space-or-hyphen

Make ido completes like built-in M-x does, useful when use smex or use ido to complete other hyphen separated choises

dotemacs-old

My Emacs Configuration

My scripts for munging, merging, and archiving OFX files

ofxtoolkit

A perl module for flattening lists of lists of lists of lists of ...

List-Flatten-Recursive

Copy specific files after building (for SCM inclusion, etc.)

Dist-Zilla-Plugin-CopyFilesFromBuild

Guess the quality encoding system used by FASTQ sequence files.

fastqident

Indent and dedent Lisp code, automatically adjust close parens

adjust-parens

A collection various utility functions I have written for data analysis in R

rctutils

mkplaylist

Generate playlists from special music tags

Ensure that POD has no duplicate section headers.

Rprofile

My ~/.Rprofile

Shell

Pod-Weaver-Plugin-EnsureUniqueSections

Public release of most of the data analysis code for Lamere et. al. 2016

cd4-histone-paper-code

Pod-Weaver-Section-WarrantyDisclaimer

Add a standard DISCLAIMER OF WARRANTY section (for your Perl module)

copytags

A fill-in-the-blank template for writing Python command-line scripts with easy option parsing

python-script-template

Extract data from multi-sheet Excel spreadsheets into CSV files

memlog

Shell

xls2csv

Scripts to build my resume and supporting files

resume

TeX

Pod-Markdown

Convert POD to Markdown

Add colors to DNA and RNA sequences in terminal output

Term-DNAColor

Perl module to Provide an open3 function with the same syntax as system

IPC-Open3-System

Split a SAM file into nonoverlapping read groups

splitloci

dotdzil

A quarantine for incomplete output files

intemp

The source files for my thesis

Thesis

TeX

emacs-system-specific-settings

Perl module to provide a csv parser with options specified on the command-line

Text-CSV-Euclid

Easily set up shell pipelines in Python

piper

Dist-Zilla-Plugin-StaticVersion

RTHOMPSON's Dist::Zilla Configuration

Dist-Zilla-PluginBundle-Author-RTHOMPSON

placsupport

A bundle that implements RTHOMPSON's preferred Pod::Weaver config

Pod-Weaver-PluginBundle-Author-RTHOMPSON

nm-actions

Dist-Zilla-Plugin-CheckVersionIncrement

Workflow to download/generate various mapping indices for the human hg38 genome

hg38-ref

Generate a README.mkdn from the POD of your main_module

Dist-Zilla-Plugin-ReadmeMarkdownFromPod