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ido-completing-read-plus
Fancy completion all over Emacs, not just for buffers and files.mac-pseudo-daemon
Emacs daemon mode that plays nice with Mac OS.with-simulated-input
Test your interactive elisp functions non-interactively!rganalysis
A script for adding replaygain tags to music filesCD4-csaw
Reproducible reanalysis of a combined ChIP-Seq & RNA-Seq data setido-yes-or-no
Use ido to answer yes or no questions.roll
A command-line dice-rolling simulator for RPGsscreen-sendenv
Modify environment variables in a running screen or tmux sessionemacs-named-timer
Simplified timer management for Emacs Lispcrm-custom
Alternate completing-read-multiple that uses completing-readtransfercoder
Transfer and transcode your music at the same timedotemacs
My Emacs configuration (contents of ~/.emacs.d/)mergesam
Automate common sam & bam conversionsgit-custom-commands
My extra github commandsdownload-youtube-subscriptions
Download your subscribed videos from Youtubeido-complete-space-or-hyphen
Make ido completes like built-in M-x does, useful when use smex or use ido to complete other hyphen separated choisesdotemacs-old
My Emacs Configurationofxtoolkit
My scripts for munging, merging, and archiving OFX filesList-Flatten-Recursive
A perl module for flattening lists of lists of lists of lists of ...Dist-Zilla-Plugin-CopyFilesFromBuild
Copy specific files after building (for SCM inclusion, etc.)fastqident
Guess the quality encoding system used by FASTQ sequence files.adjust-parens
Indent and dedent Lisp code, automatically adjust close parensrctutils
A collection various utility functions I have written for data analysis in Rmkplaylist
Generate playlists from special music tagsRprofile
My ~/.RprofilePod-Weaver-Plugin-EnsureUniqueSections
Ensure that POD has no duplicate section headers.cd4-histone-paper-code
Public release of most of the data analysis code for Lamere et. al. 2016Pod-Weaver-Section-WarrantyDisclaimer
Add a standard DISCLAIMER OF WARRANTY section (for your Perl module)copytags
python-script-template
A fill-in-the-blank template for writing Python command-line scripts with easy option parsingmemlog
xls2csv
Extract data from multi-sheet Excel spreadsheets into CSV filesresume
Scripts to build my resume and supporting filesPod-Markdown
Convert POD to MarkdownTerm-DNAColor
Add colors to DNA and RNA sequences in terminal outputIPC-Open3-System
Perl module to Provide an open3 function with the same syntax as systemsplitloci
Split a SAM file into nonoverlapping read groupsdotdzil
intemp
A quarantine for incomplete output filesThesis
The source files for my thesisemacs-system-specific-settings
Text-CSV-Euclid
Perl module to provide a csv parser with options specified on the command-linepiper
Easily set up shell pipelines in Pythonnm-actions
Dist-Zilla-PluginBundle-Author-RTHOMPSON
RTHOMPSON's Dist::Zilla Configurationplacsupport
Pod-Weaver-PluginBundle-Author-RTHOMPSON
A bundle that implements RTHOMPSON's preferred Pod::Weaver configDist-Zilla-Plugin-CheckVersionIncrement
hg38-ref
Workflow to download/generate various mapping indices for the human hg38 genomeDist-Zilla-Plugin-ReadmeMarkdownFromPod
Generate a README.mkdn from the POD of your main_moduleLove Open Source and this site? Check out how you can help us