DIDSR/VICTRE_PIPELINE

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DIDSR/VICTRE_PIPELINE

DIDSR

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Home for the unified VICTRE pipeline for in silico breast imaging.

VICTRE

Virtual Imaging Clinical Trial for Regulatory Evaluation

MCGPU

GPU-accelerated Monte Carlo x-ray transport code to simulate medical x-ray imaging devices.

VICTRE_MCGPU

Version of MC-GPU used in the VICTRE project

iMRMC

iMRMC: Software to do multi-reader multi-case analysis of reader studies

IQmodelo

Statistical Software for Task-Based Image Quality Assessment with Model (or Human) Observers

eeDAP

Evaluation Environment for Digital and Analog Pathology

breastPhantom

A multi-modality anthropomorphic digital breast phantom

DomId

A PyTorch-based suite of deep unsupervised clustering algorithms

Jupyter Notebook

LesionBlender

Repo of m-files allowing automatic seamless insertion of lesions from one image into another for medical images.

msynth-release

MCGPU-PET

ReconDBT

Reconstruction package for digital breast tomosynthsis

VisualMANTIS-WebMANTIS

Graphical interfaces that use hybridMANTIS to display simulation information and visualizations in a desktop window or through a browser.

cpr

Color Performance Review Tool for Endoscopy Devices

HTT

Repository with Data, scripts, and functions of the High-Throughput Truthing project (HTT project).

iMRMC_Binary

mantismc

Monte carlo x-rAy electroN opTical Imaging Simulation

BoneJ_Headless

Scripts for executing Fiji plugin BoneJ in headless mode in Python to compute bone microstructure metrics

ThresholdoutAUC

Jupyter Notebook

DIDSR-News

QuCAD

hybridmantis

Fast Monte Carlo tool for modeling indirect x-ray detectors using CPU and GPU in parallel

DeepLearningCamelyon_II

DRAGen

A tool for the assessment of AI generalizability via decision space composition

VICTRE_MO

Model observer code written in Matlab for detecting mass and clustered micro-calcification in 2D and 3D mammography images.

MSim3V_IA

MSim3V_IA is a self-contained computer program that is designed to aid in the development of materials that accurately simulate the x-ray interaction properties of a user-specified target material.

ARTEMIS

Particle transport, recombination and trapping in semiconductor imaging simulations

ROCtools

Software tools for ROC analysis: semi-parametric models, non-parametric analysis, curve fitting and plotting, statistical inference for ROC based indices (e.g., AUC)

LCD_CT

mitoticFigureCounts

Mitotic figure counts study data, functions, and markdown files for Tabata2019_Diagn-Pathol_v14p65.

VICTRE_DM_ROIs

VICTRE - Digital Mammography Regions of Interest

dldp

MCGPUv1.3_PCD

SAXS_data

cartesianDETECT2

Monte Carlo optical transport package for modeling pixelated scintillators

ClassifierAssessment

Classifier variability assessment; Compare Two Correlated C Indices with Right-censored Survival Outcome

ANOVA.MRMC.LOA

The functions in this package have been moved to iMRMC package

fastDETECTII

Optical transport in columnar CsI x-ray imaging detectors using the Monte Carlo method

SAXS-material-data

DIDSR-TiGER

WSI_viewer_evaluation

HPC_DPAI

The code used in the manuscript, "Scaling the Inference of Digital Pathology Deep Learning Models using CPU-based High-Performance Computing."

viperData

This repository contains supplementary materials (data, R functions, R markdown files) for Gallas2018_J-Med-Imag_v6p015501. If you are not familiar with GitHub repositories, please visit this front page.

DICaugment

Spectral-SAXS-Analysis-Tools

Scripts and software aimed at accelerating the analysis of spectral SAXS data

MISS-tool

MISS-tool: medical image segmentation synthesis tool