DCC-Lab/HiLoZebrafish

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Python
Created over 5 years ago
Updated over 1 year ago

DCC-Lab/HiLoZebrafish

DCC-Lab

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Image acquisition system for volumetric calcium imaging

RayTracing

Simple ray tracing library in Python for optical design that considers simple optical elements (with ABCD ray matrices) but also finite diameters of elements to calculate aperture and field stops, field of view, etc... Useful to validate the design of an optical system (lenses positions, power and diameters). Also permits the propagation of gaussian laser beams through the same elements.

PyTissueOptics

A very simple, fairly slow but very easy to understand and very easy to use Monte Carlo code for Tissue optics simulations.

PyHardwareLibrary

A simple application-oriented and device-oriented library with a variety of communication ports for controlling devices (POSIX serial, USB, etc...)

Polarization

A simple module to manage optical polarization with Jones and Stokes vectors.

Kirchoff

A small class to solve simple linear circuits with Kirchoff's current and voltage laws

PCA

Understanding PCA in Python

Documentation

All documentation for the group. Always in English please.

Jupyter Notebook

PyVino

Projet d'identification et caracterisation des vins avec la spectroscopie Raman.

Lemming

LEM: Lemming Enumeration Module

myTk

Simplified interface to Tk for busy Scientist

Computational-neuroscience-RNNs-

All documentation regarding the use of recurrent neurone network or RNN. Documentation regarding Deep Learning and PyTorch is also stored here.

Jupyter Notebook

PySpec

A library / software that will be used to read/write to PIXIS camera on cross-compatible devices with easy to use, non exhausitve functions

HiLo-Python

Code in Python to process HiLo images (J. Mertz technique)

Dispersion

Project to analyze and code dispersion of laser pulses in optical components