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abcd-hcp-pipeline
bids application for processing functional MRI data, robust to scanner, acquisition and age variability.nda-abcd-s3-downloader
Tool for downloading ABCD_BIDS inputs and derivatives from the ABCD-BIDS NDA Collection 3165.functional-random-forest
Functional Analysis with Random Forestsabcd-dicom2bids
For selectively downloading ABCD data QC'ed as good by the DAIC, converting it to BIDS standard input data, selecting the best pair of spin echo field maps, and correcting the sidecar JSON files to meet BIDS Validator spec.compare_matrices_to_assign_networks
cifti-connectivity
Script to generate correlation matrices from BOLD dense or parcellated time series data.file-mapper
An easy tool to copy/move/symlink files from one directory to the other!dcan-infant-pipeline
The actual pipeline code, based on hcp, for human infantsDCAN-HCP
The DCAN Lab's version of the minimal preprocessing pipeline for the Human Connectome Projectdcan_bold_processing
functional connectivity preprocessing for resting state fMRI outputs of the dcan-fmri-pipelinesRFRF
Functional Random Forest R packagemovement_regressors_power_plots
Correction of respiratory artifacts in MRI head motion estimatesBIBSnet
This BIDS App provides the utility of creating a nnU-Net anatomical MRI segmentation and mask with a infant brain trained model. It can easily be included in other processing pipelines and for circumventing JLF within Nibabies.MarginalModelCIFTI
cdni-brain
readthedocs for CDNI collaborators and membersabcd-bids-tfmri-pipeline
Pipeline to complete within-run and between-runs analyses of task-based fMRI dense timeseries data. This tool works with data that were minimally processed using the DCAN Labs' ABCD-HCP-Pipeline, including their Collection 3165 release through NDA.dcan-macaque-pipeline
The actual pipeline code, based on hcp, for non-human-primates - sp macaques.ExecutiveSummary
quality control images / html viewer for the dcan-fmri-pipelinesHBCD-MADE
HBCD branch of the MADE pipeline for EEG preprocessingbrain-roi-hausdorff-distance
Computes the maximum Hausdorff distance between pairs of ROIs in a given collection of 3D ROIs.SwipesForScienceToolkit
Tool kit for exploratory data analysis and usage of SwipesForScience JSON data, complete with anonymous sample data.dcan-nn-unet
Utility programs created for using nn-UNet on ABCD data.nhp-abcd-bids-pipeline
Non-human primate (i.e., macaque) pipeline, based on abcd-hcp-pipeline, to process fMRI data.nda-bids-upload
For uploading BIDS data to the NDA.heudiconv-helper
abcd-hcp-pipeline_audit
CABINET
CABINET is a utility that standardizes subsequent container execution. Emphasizing reproducibility, users can share JSONs to exactly replicate how containerized processes follow each other.BWAS
Code to run Brain Wide Association Studies to derive PolyNeuro Risk ScoresDCAN-Labs-Website
This repository contains the code for DCAN's websiteSLURM_wrappers
MachineLearning_SVM
connectotyping
ABCD_FD_analysis
This project houses the code repository for examining the factors that drive framewise displacement in the ABCD studyQSIPREP_HBCD_QC
Tool to make QC images for HBCD's QSIPREP Outputbiceps_cmdln
internal-tools
Tools written by DCAN Labs and used, in common, by the DCAN pipelines.simnibs_cifti_tools_RTD2
external-software
Tools needed for the DCAN Labs pipelines that we didn't write.automated-subset-analysis
Automated split-half subset reliability analysis scripts written for the ABCD resource paper.Love Open Source and this site? Check out how you can help us