CyclotronResearchCentre/Test_hMRI_processing

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CyclotronResearchCentre/Test_hMRI_processing

CyclotronResearchCentre

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Testing some functions and features from the hMRI toolbox

FASST

FASST, aka. fMRI Artefact rejection and Sleep Scoring Toolbox, public distribution with the latest updates.

spm_auto_reorient

A few routines to perform "auto reorient" in SPM

SPM_ClusterSizeThreshold

SPM Cluster Size Threshold estimation

forward

Accurate electromagnetic head models and EEG lead field matrices from T1 / DTI

MRIquality

Tools for routine quality assurance and post-acquisition MRI data quality control

SparseLowRankIdentification

Code performing "sparse low-rank indentification" on resting state fMRI data

shamo

A tool for electromagnetic modelling of the head and sensitivity analysis.

bidsme

Flexible bidsificator for multimodal datasets

NODDI_singularity

Singularity containerized version of the NODDI toolbox.

brain-tissue-radiomics-on-clinical-and-quantitative-MRI-for-MS

Supplementary materials for the paper

Jupyter Notebook

parktdi_scripts

Code associated with "Mapping track density changes in nigrostriatal and extranigral pathways in Parkinson's disease" (DOI:10.1016/j.neuroimage.2014.06.033)

USwLesion

Unified Segmentation for lesioned brain

Actigraphy

Automatic Actigraphic Recording Analysis

DTI_SpectralQuaternion

Diffusion Tensor Imaging (DTI) operator using a "spectral quaternion" decomposition.

spm-beamforming-toolbox

Automatically exported from code.google.com/p/spm-beamforming-toolbox

RestLib

Resting State fMRI Analysis Library

CAPsToolbox

Nrrd2Nifti

Some functions to convert images in NRRD format into Nifti format.

Matrix_to_NIfTI

Turning an arbitrary matrix into a NIfTI image

mpm_bids

BinomPermTest

Code associated with the the "Biased binomial assessment of cross-validated estimation of classification accuracies illustrated in diagnosis predictions" paper.

PETpro

Automated pipeline to quantify bidsified PET dataset using Logan plot model

PRoNTo_SearchLight

Search light hack for PRoNTo

USwithLesion

"Unified Segementation" for brain images showing focal brain lesions.

NetStats

This repo contains R code to plot the outputs of the nipype connectivity pipelines

BIDS_tools

Tools to create and process BIDS-organized datasets

SlidingWindowFC

Sliding window functional connectivity tools