CyclotronResearchCentre/PRoNTo_SearchLight

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Created almost 9 years ago
Updated over 8 years ago

CyclotronResearchCentre/PRoNTo_SearchLight

CyclotronResearchCentre

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Search light hack for PRoNTo

FASST

FASST, aka. fMRI Artefact rejection and Sleep Scoring Toolbox, public distribution with the latest updates.

spm_auto_reorient

A few routines to perform "auto reorient" in SPM

SPM_ClusterSizeThreshold

SPM Cluster Size Threshold estimation

forward

Accurate electromagnetic head models and EEG lead field matrices from T1 / DTI

MRIquality

Tools for routine quality assurance and post-acquisition MRI data quality control

SparseLowRankIdentification

Code performing "sparse low-rank indentification" on resting state fMRI data

shamo

A tool for electromagnetic modelling of the head and sensitivity analysis.

bidsme

Flexible bidsificator for multimodal datasets

NODDI_singularity

Singularity containerized version of the NODDI toolbox.

brain-tissue-radiomics-on-clinical-and-quantitative-MRI-for-MS

Supplementary materials for the paper

Jupyter Notebook

parktdi_scripts

Code associated with "Mapping track density changes in nigrostriatal and extranigral pathways in Parkinson's disease" (DOI:10.1016/j.neuroimage.2014.06.033)

USwLesion

Unified Segmentation for lesioned brain

Actigraphy

Automatic Actigraphic Recording Analysis

DTI_SpectralQuaternion

Diffusion Tensor Imaging (DTI) operator using a "spectral quaternion" decomposition.

spm-beamforming-toolbox

Automatically exported from code.google.com/p/spm-beamforming-toolbox

RestLib

Resting State fMRI Analysis Library

CAPsToolbox

Nrrd2Nifti

Some functions to convert images in NRRD format into Nifti format.

Matrix_to_NIfTI

Turning an arbitrary matrix into a NIfTI image

mpm_bids

BinomPermTest

Code associated with the the "Biased binomial assessment of cross-validated estimation of classification accuracies illustrated in diagnosis predictions" paper.

PETpro

Automated pipeline to quantify bidsified PET dataset using Logan plot model

USwithLesion

"Unified Segementation" for brain images showing focal brain lesions.

NetStats

This repo contains R code to plot the outputs of the nipype connectivity pipelines

BIDS_tools

Tools to create and process BIDS-organized datasets

Test_hMRI_processing

Testing some functions and features from the hMRI toolbox

SlidingWindowFC

Sliding window functional connectivity tools