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spm_auto_reorient
A few routines to perform "auto reorient" in SPMSPM_ClusterSizeThreshold
SPM Cluster Size Threshold estimationforward
Accurate electromagnetic head models and EEG lead field matrices from T1 / DTIMRIquality
Tools for routine quality assurance and post-acquisition MRI data quality controlSparseLowRankIdentification
Code performing "sparse low-rank indentification" on resting state fMRI datashamo
A tool for electromagnetic modelling of the head and sensitivity analysis.bidsme
Flexible bidsificator for multimodal datasetsNODDI_singularity
Singularity containerized version of the NODDI toolbox.brain-tissue-radiomics-on-clinical-and-quantitative-MRI-for-MS
Supplementary materials for the paperparktdi_scripts
Code associated with "Mapping track density changes in nigrostriatal and extranigral pathways in Parkinson's disease" (DOI:10.1016/j.neuroimage.2014.06.033)USwLesion
Unified Segmentation for lesioned brainActigraphy
Automatic Actigraphic Recording AnalysisDTI_SpectralQuaternion
Diffusion Tensor Imaging (DTI) operator using a "spectral quaternion" decomposition.spm-beamforming-toolbox
Automatically exported from code.google.com/p/spm-beamforming-toolboxRestLib
Resting State fMRI Analysis LibraryCAPsToolbox
Nrrd2Nifti
Some functions to convert images in NRRD format into Nifti format.Matrix_to_NIfTI
Turning an arbitrary matrix into a NIfTI imagempm_bids
BinomPermTest
Code associated with the the "Biased binomial assessment of cross-validated estimation of classification accuracies illustrated in diagnosis predictions" paper.PETpro
Automated pipeline to quantify bidsified PET dataset using Logan plot modelPRoNTo_SearchLight
Search light hack for PRoNToUSwithLesion
"Unified Segementation" for brain images showing focal brain lesions.NetStats
This repo contains R code to plot the outputs of the nipype connectivity pipelinesBIDS_tools
Tools to create and process BIDS-organized datasetsTest_hMRI_processing
Testing some functions and features from the hMRI toolboxSlidingWindowFC
Sliding window functional connectivity toolsLove Open Source and this site? Check out how you can help us