CovertLab/WholeCellKB CovertLab/WholeCellKB

  • Stars
    star
    7
  • Rank 2,294,772 (Top 46 %)
  • Language
    Python
  • Created over 11 years ago
  • Updated over 10 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
CovertLab/WholeCellKB
github

CovertLab

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

WholeCellKB is a collection of free, open-source model organism databases designed specifically to enable comprehensive, dynamic simulations of entire cells and organisms.

More Repositories

1

WholeCell

Mycoplasma genitalium whole-cell model
MATLAB
118
star
2

WholeCellEcoliRelease

Release of the whole cell E. coli model.
Python
60
star
3

DeepCell

Python
49
star
4

wcEcoli

Whole Cell Model of E. coli
Python
18
star
5

vEcoli

Whole cell model of E. coli implemented with Vivarium
Jupyter Notebook
12
star
6

WholeCellViz

Data visualization for whole-cell models
JavaScript
11
star
7

WholeCellSimDB

WholeCellDB is a hybrid SQL/HDF database for storing and retrieving whole-cell model predictions.
Python
7
star
8

borealis

Run FireWorks workflows in Google Cloud.
Python
4
star
9

arrow

Stochastic simulations in python
Python
3
star
10

covertrack

Jupyter Notebook
2
star
11

parest

Workflow for E. coli glycolysis ODE model parameter estimation.
Python
2
star
12

NetworkPainter

Web-based software program creating and animating signaling network diagrams
ActionScript
1
star