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reg-gen
Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.CrossTalkeR
R package to do the Ligand Receptor Analysis VisualizationscMEGA
scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inferencescopen
scOpen: single-cell open chromatin analysis via NMF modellingscrna_seurat_pipeline
comprehensive analysis of single-cell transcriptomics dataMOJITOO
MOJITOO: a fast and universal method for integration of multimodal single cell dataPILOT
Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)sc2marker
Surface Marker Detection Using Single Cell Datascopen-reproducibility
A repository to include all scripts and codes for reproducibility of scOpen manuscriptCimpleG
CimpleG, an R package to find (small) CpG signatures.phlower
Use hodge decomposition for trajectory analysisRNA_Expression_Analysis_in_Python
practical_SS2015
Bioinformatics Lab RWTH Aachen SS '15SOSE_2021
A repository of materials for the SOSE2021 course of CostaLabcondcomp
An R package for analysis of data conditions in scRNA-seq.pyCrossTalkeR
dream-challenge
The code and data for the ENCODE-DREAM in vivo Transcription Factor Binding Site Prediction ChallengeLove Open Source and this site? Check out how you can help us