ContentMine/ebi_workshop_20141006

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ContentMine/ebi_workshop_20141006

ContentMine

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ContentMine workshop at EBI, October 6th 2014

quickscrape

A scraping command line tool for the modern web

getpapers

Get metadata, fulltexts or fulltext URLs of papers matching a search query

journal-scrapers

Journal scraper definitions for the ContentMine framework

workshop-resources

This repository contains material helping you to set up a ContentMine workshop. It also includes tutorials for learning the ContentMine tools on your own.

norma

Convert XML/SVG/PDF into normalised, sectioned, scholarly HTML

scraperJSON

The scraperJSON standard for defining web scrapers as JSON objects

thresher

Headless scraperJSON scraping for Node.js

ami

FutureTDM

Materials of FutureTDM project

Jupyter Notebook

cm-crawlerd

ContentMine crawler daemon - this finds the latest articles in journals we mine, and stores them in our scraping queue

contentmine-app

The ContentMine ecosystem as a standalone app for OSX, Windows and Linux.

wikifactmine-api

The WikifactMine API Endpoint

cmbot

An autonomous bot for scraping the academic literature

canary

Canary is a UI to the contentmine tools getpapers, quickscrape, norma, and ami.

NCBI2wikidata

old_site

The contentmine site, which (currently) includes the API

contentmine.github.io

ContentMine installation instructions website

canary-perch

ES Academic paper fact extraction - backend for canary

visualizations

neuro

Neurophysiology, especially voltage traces

pyCProject

Provides basic function to read a ContentMine CProject and CTrees into python datastructures.

vms

ContentMine virtual machines

node-journalTOCs

Node.js client for the JournalTOCs API

scripts

Shell and Python scripts for utility activities

cm-ucl

A repository to openly track progress on table extraction.

releases

Release packages for ContentMine projects

wikibase

Simple golang library for interfacing with wikibase.

workshops

General materials for workshops

Chicago-20141114

ContentMine workshop in Chicago (US), November 14th 2014

nhtml

NHTML is a normalization of scholarly documents from {PDF, HTML, XML, SVG, PNG} into a single semantic format

ScienceSourceReview

CMServices

Web services layer for ContentMine text and data mining tools and utilities

dictionaries

Dictionaries for use with `ami` , including some management software

vt-open-data-week

Virginia Tech workshop

Jupyter Notebook

pdf2svg

ContentMine Fork of the WWMM pdf2svg Package

contentmine.org

The static site

imageanalysis

ContentMine Fork of the WWMM imageanalysis Package

pyCMine

Python scripts for downstream analyses of content mine extracted facts, mostly comming from pyCProject

cephis

Document processing including support libraries and PDFBox2

cm-uclii

Data and progress tracking for table extraction and semantically guided content enhancement

tilburg

Extraction of data from Vector-based Funnel Plots in the scholarly literature

JISC-Workshop-1Dec2014

Workshop resources for one day workshop at JISC on 1 Dec 2014

2015-11-07-mozfest15

ijsem

Computational results of PLUTo ami-phylo analysis of trees from Int. J. Syst. Evol. Microbiol.

amidemos

contentmine-gui

GUI for executing ContentMine commands - browser SPA for running locally on user's machine.