CoBrALab/TractREC CoBrALab/TractREC

  • Stars
    star
    1
  • Language
    Python
  • License
    MIT License
  • Created almost 9 years ago
  • Updated almost 7 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
CoBrALab/TractREC
github

CoBrALab

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Collection of tools to perform diffusion processing and tractography.

More Repositories

1

MAGeTbrain

Multiple Automatically Generated Templates brain segmentation algorithm
Python
48
star
2

documentation

Documentation for every thing, everything documented
41
star
3

RABIES

fMRI preprocessing pipeline and analysis tools adapted for rodent images. Visit the full documentation at https://rabies.readthedocs.io/en/stable/
Python
33
star
4

atlases

Segmentations of Neuroanatomy on Hi-Res T1 and T2 MRIs and publicly available population averages in MNI space
Python
27
star
5

qbatch

Python
27
star
6

optimized_antsMultivariateTemplateConstruction

A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support
Shell
22
star
7

antsRegistration-MAGeT

A reimplementation of MAGeTbrain using only ANTs tools.
Shell
16
star
8

minc-bpipe-library

Library of bpipe implemented commands commonly applied to minc datafiles, suitable for importing into other pipelines
Shell
13
star
9

twolevel_ants_dbm

A twolevel deformation based morphometry pipeline using ants
Python
10
star
10

UKBB-tabular-processing

Scripts to handle the tabular data associated with the UK BioBank
Python
8
star
11

MINC-VM

Packer built VMs with minc-toolkit and friends
Shell
7
star
12

minc-toolkit-extras

Extra miscellaneous scripts for minc-toolkit
Shell
6
star
13

cobra-nmf

Collection of scripts for formatting vertex and/or voxel data into matrix format
Python
5
star
14

AWoL-MRF

Label-Fusion Method for MR image data
MATLAB
5
star
15

fMRI_phantom_analysis

Python
3
star
16

PUB-MRF

Markov Random Fields model for label fusion in automated MRI segmentation pipelines.
Python
2
star
17

RABIES_tutorial

Jupyter Notebook
1
star
18

BSC

MRI biomarker, boundary sharpness coefficient (BSC).
Shell
1
star
19

HitchhikersGuideToNeuroimaging

The Hitchhiker's Guide To Neuroimaging - All the things HOWTOs don't tell you
1
star
20

MousePhgyMetrics

Extracts various instantaneous metrics from the raw respiration and pulse oximetry traces
Python
1
star
21

LSN

Longitudinal Siamese Network for clinical trajectory prediction
Jupyter Notebook
1
star
22

MAGeTDocker

Repository with Docker Build for MAGeTBrain
Dockerfile
1
star
23

MTR_processing

Jupyter Notebook
1
star
24

iterativeN4_multispectral

A pipeline which performs iterative classification and bias field correction of T1-weighted MRIs
Shell
1
star