CirculatoryHealth/LoFTK

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Created over 4 years ago
Updated 11 months ago

CirculatoryHealth/LoFTK

CirculatoryHealth

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The Loss-of-Function ToolKit (LoFTK) allows efficient and automated prediction of LoF variants from both genotyped and sequenced genomes, identifying genes that are inactive in one or two copies, and providing summary statistics for downstream analyses.

MicroanatomyHumanPlaque_scRNAseq

Scripts accompanying "Microanatomy of the human atherosclerotic plaque by single-cell transcriptomics"

CHARGE_1000G_CAC

CHARGE Consortium: collaboration for mapping targets from 1000G GWAS on coronary artery calcification (CAC) with Maryam Kavousi, Maxime Bos, Clint L. Miller, and Pat Peyser.

Inherited-cardiomyopathies

This project aimed to to assess the prevalence of pathogenic variants associated with ARVC, DCM or HCM in the general UK population using UK Biobank data.

UKBioPick

The UKBioPick allows extraction of interested UK Biobank phenotypes.

EntropyMasker

A fully automated approach for separating foreground (tissue) and background in bright-field microscopic whole-slide images of (immuno)histologically stained samples.

Jupyter Notebook

Sex_differences_scRNA

Sex differences in atherosclerotic lesions are driven by both cell specific RNA expression and cellular composition

PlaqueCluster

EndoMT_in_AE

gwas2single