Cibiv/trumicount

Stars
9
Rank 1,939,409 (Top 39 %)
Language
TeX
License
GNU Affero Genera...
Created almost 7 years ago
Updated about 3 years ago

Cibiv/trumicount

Cibiv

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Correctly counting molecules using unique molecular identifiers (UMIs)

IQ-TREE

Efficient phylogenomic software by maximum likelihood

NextGenMap

NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms while still outperforming them in terms of runtime. This allows analysing large scale datasets even with increased SNP rates or higher error rates (e.g. caused by specialized experimental protocols) and avoids biases caused by highly variable regions in the genome.

Teaser

A tool to benchmark mappers and different parameters within minutes

BODscore

Scoring method for identified SNPs

Cibiv.github.io

gwpcR

Corrects UMI-based NGS data for phantom UMIs and lost molecules using a mechanistic model of UMI-based experiments

ModelRevelator

cibiv-beamer-template

CIBIV latex beamer template base on mtheme (https://github.com/matze/mtheme)

zone-net

Neural Network predicting if the underlying tree of a given MSA is a Farris- or Felsenstein-like tree

EvoNAPS

EvoNAPS is a database providing input parameter settings for extensive sequence simulations to be used in phylogenetic studies.

pyrganoid