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IQ-TREE
Efficient phylogenomic software by maximum likelihoodNextGenMap
NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms while still outperforming them in terms of runtime. This allows analysing large scale datasets even with increased SNP rates or higher error rates (e.g. caused by specialized experimental protocols) and avoids biases caused by highly variable regions in the genome.Teaser
A tool to benchmark mappers and different parameters within minutestrumicount
Correctly counting molecules using unique molecular identifiers (UMIs)BODscore
Scoring method for identified SNPsgwpcR
Corrects UMI-based NGS data for phantom UMIs and lost molecules using a mechanistic model of UMI-based experimentsModelRevelator
cibiv-beamer-template
CIBIV latex beamer template base on mtheme (https://github.com/matze/mtheme)zone-net
Neural Network predicting if the underlying tree of a given MSA is a Farris- or Felsenstein-like treeEvoNAPS
EvoNAPS is a database providing input parameter settings for extensive sequence simulations to be used in phylogenetic studies.Love Open Source and this site? Check out how you can help us