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RCM
A model-based visualization method for microbiome dataSPsimSeq
Semi-parametric simulation of bulk and single cell RNA-seq dataxnet
xnet: a package for supervised network predictiondigipcr
digital PCR processing tools in RunifiedWMWqPCR
Bioconductor package of unified Wilcoxon-Mann-Whitney test for qPCRreconsi
Resample collapsed null distributions for simultaneous inference under dependenceAdditional-File-6
Additional File 6PIMseq
repository for the package PIMseqNTCPmodels
Package implementing NTCP modelsdPowerCalcR
Power calculations for digital PCRsmooth2
Additional Material for the book Smooth Tests of Goodness of Fit Using RPIMseq-paper
This repository contains codes and materials used in the PIMseq paper.combi
Explorative integration of genomics data through multiplotsUCNR
Simulation code, case studies and tutorials for the Unified Censored Normal Regression model for qPCR analysis.EBayesH
The R package EBayesHmountainr
Bringing R and alpine to DockerAppDGE
Shiny application to evaluate the performance of several differential gene expression tools for RNA-seq data.Additional-File-2
This github repository includes R software codes used for a study on the evaluation of 14 differential gene expression methods for RNA-sequencing data (particularly for mRNA and lncRNA). The study has three main modules: (1) comparing selected normalization methods, (2) concordance analysis of 14 DGE analysis tools using 6 publicly accessible real RNA-seq data, and (3) non-parametric simulation study to evaluate tools with respect to false discovery rate and sensitivity.Love Open Source and this site? Check out how you can help us