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RCM
A model-based visualization method for microbiome dataSPsimSeq
Semi-parametric simulation of bulk and single cell RNA-seq dataxnet
xnet: a package for supervised network predictionpim
R package for probabilistic index modelsdigipcr
digital PCR processing tools in RunifiedWMWqPCR
Bioconductor package of unified Wilcoxon-Mann-Whitney test for qPCRreconsi
Resample collapsed null distributions for simultaneous inference under dependenceAdditional-File-6
Additional File 6PIMseq
repository for the package PIMseqNTCPmodels
Package implementing NTCP modelsdPowerCalcR
Power calculations for digital PCRsmooth2
Additional Material for the book Smooth Tests of Goodness of Fit Using RPIMseq-paper
This repository contains codes and materials used in the PIMseq paper.UCNR
Simulation code, case studies and tutorials for the Unified Censored Normal Regression model for qPCR analysis.EBayesH
The R package EBayesHmountainr
Bringing R and alpine to DockerAppDGE
Shiny application to evaluate the performance of several differential gene expression tools for RNA-seq data.Additional-File-2
This github repository includes R software codes used for a study on the evaluation of 14 differential gene expression methods for RNA-sequencing data (particularly for mRNA and lncRNA). The study has three main modules: (1) comparing selected normalization methods, (2) concordance analysis of 14 DGE analysis tools using 6 publicly accessible real RNA-seq data, and (3) non-parametric simulation study to evaluate tools with respect to false discovery rate and sensitivity.Love Open Source and this site? Check out how you can help us