CSOgroup/Lymphomoid-IF-pipeline

Stars
1
Language
Python
Created almost 3 years ago
Updated 7 months ago

CSOgroup/Lymphomoid-IF-pipeline

CSOgroup

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

CALDER

cellcharter

A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.

CALDER2

CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hierarchical organization and obtain sub-compartments; (3) compute nested sub-domains within each chromatin domain from short-range contacts.

TAD-benchmarking-scripts

Repository containing the scripts regarding analyses in Zufferey & Tavernari et al.

Donaldson-et-al-scripts

A public repository containing the scripts regarding analyses in Donaldson, Sungalee, Zufferey, Tavernari et al.

scrnaseq_pipeline

GridQuant

Gridding framework for quantification and statistical analyses of spatially-resolved protein expression from high resolution images

CALDER_workflow

Scalable pipeline for the computation of compartment domains based on Hi-C data using CALDER

WGD

Analysis code for "Whole genome doubling drives oncogenic loss of chromatin segregation"

TLS-finder

A pipeline to detect Tertiary Lymphoid Structures in-situ from CD20 immunofluorescence staining images.