• Stars
    star
    4
  • Rank 3,304,323 (Top 66 %)
  • Language
    R
  • License
    MIT License
  • Created over 4 years ago
  • Updated almost 2 years ago

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Data and scripts of Antibiotic Recovery Study

More Repositories

1

lofreq

LoFreq Star: Sensitive variant calling from sequencing data
C
92
star
2

OPERA-MS

OPERA-MS - Hybrid Metagenomic Assembler
C++
81
star
3

CaDRReS

Cancer Drug Response prediction using a Recommender System
Python
39
star
4

GERMS_16S_pipeline

Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequences
Python
14
star
5

INC-Seq

INC-Seq: Accurate single molecule reads using nanopore sequencing
Python
13
star
6

CaDRReS-Sc

CaDRReS-Sc is a framework for analyzing drug response heterogeneity based on single-cell RNA-seq data
Jupyter Notebook
12
star
7

shotgun-metagenomics-pipeline

A pipeline for primary analysis of shotgun metagenomic sequencing data
Python
10
star
8

OncoIMPACT

Cancer-omics Data Integration
Perl
6
star
9

atminter

SVM/regex abstract parser for identification of microbial interactions
Python
6
star
10

TUGDA

TUGDA is a novel multi-task unsupervised domain adaptation method that leverages transfer learning from tasks/domains in a unified framework.
Jupyter Notebook
6
star
11

splash

Scripts to analyze data from the SPLASH protocol for generating in vivo RNA interactome maps
Python
5
star
12

driver_evaluation

Perl
4
star
13

driver-benchmarking

Pipeline for mutation benchmarking of various softwares.
Perl
3
star
14

ViPR2

Viral Pipeline Runner Version 2 >>> superseded by ViPR3 https://github.com/gis-rpd/pipelines/tree/master/germs/vipr
Python
3
star
15

vipr

Viral Pipeline Runner: >>> superseded by https://github.com/CSB5/ViPR2
Python
3
star
16

EDDA

Power Your Design
R
2
star
17

decont

Decontaminate FastQ files
Python
2
star
18

misc-scripts

Miscellaneous scripts
Python
2
star
19

GiRaF

Robust, Computational Identification of Influenza Reassortments via Graph Mining
2
star
20

csb5.github.io

github pages for csb5
HTML
1
star
21

TCGA-preprocessing

Perl
1
star
22

MetageNN

MetageNN is a proof of concept neural network used to obtain a memory-efficient taxonomic classifier robust to sequencing errors and missing genomes
Python
1
star
23

SPMP

Singapore Platinum Metagenomes Project
Jupyter Notebook
1
star