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lofreq
LoFreq Star: Sensitive variant calling from sequencing dataOPERA-MS
OPERA-MS - Hybrid Metagenomic AssemblerCaDRReS
Cancer Drug Response prediction using a Recommender SystemGERMS_16S_pipeline
Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequencesCaDRReS-Sc
CaDRReS-Sc is a framework for analyzing drug response heterogeneity based on single-cell RNA-seq datashotgun-metagenomics-pipeline
A pipeline for primary analysis of shotgun metagenomic sequencing dataOncoIMPACT
Cancer-omics Data Integrationatminter
SVM/regex abstract parser for identification of microbial interactionsTUGDA
TUGDA is a novel multi-task unsupervised domain adaptation method that leverages transfer learning from tasks/domains in a unified framework.splash
Scripts to analyze data from the SPLASH protocol for generating in vivo RNA interactome mapsRecovery_Determinants_Study
Data and scripts of Antibiotic Recovery Studydriver_evaluation
driver-benchmarking
Pipeline for mutation benchmarking of various softwares.ViPR2
Viral Pipeline Runner Version 2 >>> superseded by ViPR3 https://github.com/gis-rpd/pipelines/tree/master/germs/viprvipr
Viral Pipeline Runner: >>> superseded by https://github.com/CSB5/ViPR2EDDA
Power Your Designdecont
Decontaminate FastQ filesmisc-scripts
Miscellaneous scriptsGiRaF
Robust, Computational Identification of Influenza Reassortments via Graph Miningcsb5.github.io
github pages for csb5TCGA-preprocessing
MetageNN
MetageNN is a proof of concept neural network used to obtain a memory-efficient taxonomic classifier robust to sequencing errors and missing genomesSPMP
Singapore Platinum Metagenomes ProjectLove Open Source and this site? Check out how you can help us