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AEGeAn
Integrated toolkit for analysis and evaluation of annotated genomesSRAssembler
Selective and Recursive local Assemblerpdom-genome-project
Polistes dominula genome project, a collaboration between the Insect Sociogenomics Lab at Iowa State University and the Computational Genome Science Lab at Indiana UniversityMoVRs
Motif set Reduction and Validation (MoVRs) - a workflow for the derivation of genome-wide DNA motif detection and vettingGoSTRIPES
Computational workflows for STRIPE-seq data analysesTRegGA
Targeted reference-guided genome assembly for comparative rice genomicsbghandbook
Handbook for Brendel Group students, postdocs, and staffFMAB
Fundamental Models and Algorithms in BioinformaticsBWASP
Bisulfite-seq data Workflow Automation Software and ProtocolsBWASPR
R functions and scripts to process output from the BWASP workflowGoRAMPAGE
GoRAMPAGE - a workflow for promoter detection by 5'-read mappingcode4Rice3K
code developed for the analysis of the Rice 3000 Genomes project dataHymHub
HymHub is now GenHubbgSingularityHub
A portal to our collection of Singularity/Apptainer definition and image filesTSRchitect
Promoter identification from diverse types of large-scale TSS profiling dataLove Open Source and this site? Check out how you can help us