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HighFive
HighFive - Header-only C++ HDF5 interfaceBrayns
Visualizer for large-scale and interactive ray-tracing of neuronsnexus
Blue Brain Nexus - A knowledge graph for data-driven scienceBluePyOpt
Blue Brain Python Optimisation LibraryCoreNeuron
Simulator optimized for large scale neural network simulations.NeuroMorphoVis
A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing digital reconstructions of neuronal morphology skeletons extracted from microscopy stacks.NeuroM
Neuronal Morphology Analysis ToolBioExplorer
The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive explorationeFEL
Electrophys Feature Extraction LibraryTide
Tiled Interactive Display Environmentnmodl
Code Generation Framework For NEURON MODeling LanguageMOOC-neurons-and-synapses-2017
Reference data for the "Simulation Neuroscience:Neurons and Synapses" Massive Online Open CourseSearch
Blue Brain text mining toolbox for semantic search and structured information extractionRockets
REST and websockets C++ libraryNeuroTS
Topological Neuron Synthesisnexus-forge
Building and Using Knowledge Graphs made easyVessMorphoVis
A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing vasculature (or blood vessels) morphologies.Livre
Large-scale Interactive Volume Rendering EngineRTNeuron
Interactive visualization framework for geometrically detailed neuron simulationsBlueGraph
Python framework for graph analytics and co-occurrence analysisTMD
A python package for the topological analysis of neurons.MorphIO
A python and C++ library for reading and writing neuronal morphologiesSimulationTutorials
Public tutorials around electrophysiological simulationsbluima
Natural Language Processing Toolkit for NeuroscienceUltraliser
Reconstruction of watertight meshes and annotated volumes of neuroscience spatial structures from non-watertight inputs, segmented masks, skeletons of NGV morphologies and volumes.Brion
Blue Brain C++ File IO LibraryDeflect
C++ library for building applications to stream pixels to Tidebbp-nixpkgs
Blue Brain Project nixpkgs configuration - Build a brain with Nixsnap
The Blue Brain Pythonic Simulation and Network Analysis Productivity layernexus-web
Nexus Web is the interface of Blue Brain Nexusnexus-kg
Nexus KnowledgeGraph Serviceneurocurator
Desktop application (GUI) to perform systematic and collaborative curation of neuroscientific literature.EModelRunner
Runs cells from stand-alone packages.osgTransparency
OSG render bins for transparent geometryAtlas-Download-Tools
Search, download, and prepare brain atlas data.BluePyEfe
BluePyEfe: Blue Brain Python E-feature extractionBluePyMM
Blue Brain Python Cell Model Managementcyme
Framework to facilitate SIMD programming, without any tedious SIMD intrinsics.atlas-alignment
Blue Brain multi-modal registration and alignment toolboxdash
Data Access and Sharinglibsonata
A python and C++ interface to the SONATA formatLong-range-micro-connectome
BlueBrain's recipe writer to parameterize structure and logic of a mouse whole-neocortex connectomenexus-js
A set of JavaScript libraries built on top of Nexusbluebrain.github.com
API documentation for BlueBrain projects:nexus-bbp-domains
BBP domains specification (schemas, vocabularies)NeuroR
A collection of tools to repair morphologiesneurodamus
A BBP Simulation Control application for NEURONBlueCelluLab
Simulating and experimenting on single neuronssinglecell-emodel-suite
MOOC-hippocampus-network-simulation-2019
Currentscape
Currentscape is a Python tool enabling scientists to easily plot the currents in electrical neuron models. The code is based on the paper Alonso and Marder, 2019.morph-tool
nat
Python module to use the annotations created with NeuroCurator, for example in a Jupyter notebook.spack-packages
Repository of spack external packageshpc-coding-conventions
Pydoxine
Python docstring generation for C++ projects using boost::pythondata-validation-framework
Simple framework to create data validation workflows.SSCxEModelExamples
nexus-prov
SHACL shapes for W3C PROV-Omorphoclass
Neuronal morphology preparation and classification using Machine Learning.nexus-search-webapp
The Searchable Knowledge-Graph Applicationnexus-python-sdk
A Python API to interface with Nexus REST APIluigi-tools
Extra tools to work with the Luigi libraryAstroVascPy
Vasculature blood flow computation and impact of astrocytic endfeet on vesselsvoxcell
Tools to work with voxel based brain atlases.bluepyentity
Manage entities within the knowledge graphblueetl
Multiple simulations analysis toollearning_musculoskeletal_arm_control
This repository contains the source code of the paper titled "Optimum trajectory learning in musculoskeletal systems with model predictive control and deep reinforcement learning".nexus-iam
Nexus IAM ServiceConnectomeUtilities
Connectome UtilitiesBlueNaaS-Subcellular
A web environment for the simulation of brain molecular networks.morphology-workflows
Workflows used for morphology processing.me-features-to-mo-ID-mapping
Monsteer
Interactive Supercomputing Tools and Libraryhippocampus-workshop
Deep-Atlas
atlas-annotation
Align and improve brain annotation atlasesbasalt
C++11 Graph Storage librarycodash
Collage-based distribution of DASH entitiesneuromapp
The neuromapp library reproduces the algorithms of the main software of the BBP as a collection of mini-appsatlas-direction-vectors
Tools to compute direction vectors in the context of brain atlases.nexus-service
Building blocks commonly used in Nexus servicesemodel-generalisation
Generalisation of electrical models of neurons with MCMCRenderingResourceManager
A Python based service managing rendering resources for visualization web servicesmorphology-documentation
Morphology Specifications used at BBPnexus-cli
A Command Line Interface (CLI) for Nexussbt-nexus
An SBT Plugin for building Nexus Scala based projectsDMT
BluePyEModel
Blue Brain Python Electrical Modeling Pipelinegit-cmake-format
mod2c
Converter for mod files to C codediameter-synthesis
Synthesize diameters of neuronal morphologiesdir-content-diff
Simple tool to compare directory contents.sphinx-bluebrain-theme
The Blue Brain Project's documentation theme.neurox
A parallel & distributed asynchronous simulator of extended Hodgkin-Huxley neuron modelsEMSim
EMSim is a library that compute different electro-magnetic effects like LPF and VSD.bluima_resources
Resource files for bluimame-types-mapper
nexus-commons
Nexus Common Librariesvascpy
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