Discover Biomedical-Imaging-Group/GlobalBioIm Open Source project

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MATLAB
License
GNU General Publi...
Created about 6 years ago
Updated 3 months ago

Biomedical-Imaging-Group

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A unifying Matlab framework for the development of reconstruction algorithms (solving inverse problems) in computational imaging

DeconvolutionLab2

Java (ImageJ/Fiji) software package for 3D deconvolution microscopy

Java

OrientationJ

ImageJ's plugin for directional analysis in images: color-coded analysis, distribution of orientation, vector field, keypoint detection

Java

PSFGenerator

A Java software package to generate realistic 3D microscope Point-Spread Function (PSF)

Java

interactive-kit

A toolkit for interactive visualization of signal and image processing on Jupyter Notebooks.

Python

image-access

A class for the didactic implementation of image-processing algorithms in JavaScript.

JavaScript

Steer-n-Detect

ImageJ plugin - Steerable Template Detector

Java

Continuous_FRC_SMLM

Computes the Fourier-ring correlation (FRC) in the continuous domain for single molecule localization microscopy (SMLM)

Python

EDF-Extended-Depth-of-Field

An ImageJ plugin for stack focusing. Implementation of several algorithms form max-variance to max-wavelets.

Java

Multi-Kernel-Regression-gTV-

The accompanying codes of the paper "Multi-Kernel Regression with Sparsity Constraint"

MATLAB

PureDenoise

Java

CryoEM-Joint-Refinement

Joint angular refinement and reconstruction algorithm for single-particle Cryo-EM.

MATLAB

IPLABs-distribution-2023

Jupyter Notebook

SingleCellClassifier

Single Cell Classifier (SCC) is an ImageJ/Fiji plugin that aims to classify cells based on features related to their nuclei and their neighbors.

Jupyter Notebook

mij

MIJ Matlab-ImageJ connector

Java

Generating-Sparse-Processes

Jupyter Notebook

Biomedical-Imaging-Group/GlobalBioIm

Biomedical-Imaging-Group

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