BiomedSciAI/Geno4SD

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9
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Jupyter Notebook
License
Apache License 2.0
Created about 2 years ago
Updated 11 months ago

BiomedSciAI/Geno4SD

BiomedSciAI

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An python omics data toolkit for the analysis across biological scales

causallib

A Python package for modular causal inference analysis and model evaluations

histocartography

A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in computational pathology.

fuse-med-ml

A python framework accelerating ML based discovery in the medical field by encouraging code reuse. Batteries included :)

DPM360

Repository for Disease Progression Modeling workbench 360 - An end-to-end deep learning model training framework in python on OMOP data

fuse-drug

FuseMedML based molecular biochemistry library for drug discovery/repurposing

multimodal-models-toolkit

Jupyter Notebook

gene-benchmark

Benchmark gene representations from different model families

Jupyter Notebook

biomed-multi-view

This repository contains the implementation of the Multi-view Molecular Embedding with Late Fusion (MMELON) architecture. MMELON combines molecular representations from three views — image, graph, and text —to learn a joint embedding that can be finetuned for downstream tasks in chemical and biological property prediction.

r-BRICS

Revised breaking of retrosynthetically interesting chemical substructures (r-BRICS) – a revised BRICS module based on rdKit that breaks ring structures and carbon chains