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Contributions
Contribute Packages to BioconductorBiocStickers
Stickers for some Bioconductor packages - feel free to contribute and/or modify.CSAMA
Course material for CSAMA: Statistical Data Analysis for Genome Scale BiologyGenomicDataCommons
Provide R access to the NCI Genomic Data Commons portal.BiocWorkshops
β οΈ 2018 β οΈ Bioconductor Workshopsbioconductor_docker
Docker Containers for BioconductorBiocParallel
Bioconductor facilities for parallel evaluationBiocManager
CRAN Package For Managing Bioconductor PackagesOrchestratingSingleCellAnalysis
Content for the OSCA Book.LearnBioconductor
Training material for introductory R / Bioconductor coursesbioc_docker
[DEPRECATED] Docker containers for BioconductorBiostrings
Efficient manipulation of biological stringsGoogleGenomics
[DEPRECATED] An R package for Google Genomics API queries.BiocIntro
Course material for introductory R / Bioconductor coursesOrchestratingSingleCellAnalysis-release
An online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.GenomicRanges
Representation and manipulation of genomic intervalsbasilisk
Clone of the Bioconductor repository for the basilisk package.BiocWorkshops2019
The official repository of the Bioconductor 2019 Conference Workshops πbioconductor_full
[DEPRECATED] Docker Images which include a complete installation of all software needed to build all Bioconductor packagesSummarizedExperiment
SummarizedExperiment containerGenomicFeatures
Conveniently import and query gene modelscopy-number-analysis
Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysisBiocAdvanced
Advanced R / Bioconductor training materialDelayedArray
A unified framework for working transparently with on-disk and in-memory array-like datasetsRsamtools
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file importbioconductor.org
Source code for the Bioconductor websiteBuildABiocWorkshop
Template for building a bioconductor workshop package using github actionsIRanges
Foundation of integer range manipulation in BioconductorVariantAnnotation
Annotation of Genetic VariantsS4Vectors
Foundation of vector-like and list-like containers in BioconductorUseBioconductor
Training material for intermediate R / Bioconductor coursesGenomeInfoDb
Utilities for manipulating chromosome names, including modifying them to follow a particular naming stylebioc_git_transition
This python package is for transitioning bioconductor from SVN to gitBiocStyle
Issues and pull requests for BiocStyle should go here.bioconductor-teaching
Bioconductor teaching and education committeeMatrixGenerics
S4 Generic Summary Statistic Functions that Operate on Matrix-Like ObjectsBioC2020
BioC2020: Where Software and Biology ConnectCSAMA2015
Course material for CSAMA 2015: Statistics and Computing in Genome Data ScienceBiocGenerics
Defines many S4 generic functions used in BioconductorAnnotationHub
Client for the Bioconductor AnnotationHub web resourcebiocblog
A Quarto blog for Bioconductor communityBBS
The Bioconductor Build SystemHDF5Array
HDF5 backend for DelayedArray objectsBiocFileCache
Manage Files Across SessionsRhtslib
HTSlib high-throughput sequencing library as an R packageAnVIL
Interact with AnVIL and Leonardo projectsBiocCheck
HCABrowser
Browse the Human Cell Atlas data portalsweave2rmd
A project for converting Bioconductor Sweave documents to RmdEuroBioc2017
European Bioconductor Meeting 2017SparseArray
High-performance sparse data representation and manipulation in REuroBioC2023
pkgrevdocs
Training Material for Community ReviewersBiocWorkingGroups
Bioconductor working group guidelines. Also, a list of active, suggested, and inactive working groups for bioconductor for the community to volunteer to be apart of. The community is also welcome to suggest new working groups.BSgenome
Software infrastructure for efficient representation of full genomes and their SNPsShortRead
CSAMA2016
Repository for CSAMA 2016 course materialIntermediateR
Intermediate R course offered to members of RPCI / SUNY at BuffaloGenomicAlignments
Representation and manipulation of short genomic alignmentsBiocGithubHelp
Notes and tips for using github with BiocondcutorTENxBrainData
An ExperimentHub package for the 1.3 million brain cell 10X single-cell RNA-seq data set.BioC2021
BioC2021: Where Software and Biology ConnectAnnotationDbi
Manipulation of SQLite-based annotations in BioconductorBioC2019
BioC2019: Where Software and Biology ConnectExperimentHub
Client to access ExperimentHub resourcesBiocInstaller
Install / Update Bioconductor, CRAN, and github PackagesBiobase
Biobase: Base functions for BioconductorLoomExperiment
A package to read, write, and manipulate loom files using LoomExperiments. Uses the loom file format from the Linnarson Lab. https://linnarssonlab.org/loompy/BiocAsia2020
BiocAsia2020 repositorygenefilter
genefilter: methods for filtering genes from high-throughput experimentspackagebuilder
BioC2018
BioC 2018: Where Software and Biology ConnectGDSArray
Representing GDS files as array-like objectsGSE62944
Experiment Data Package for TCGA processed RNA-Seq dataS4Arrays
Foundation of array-like containers in Bioconductorworkshop-contributions
Repository for managing contributions to workshop.bioconductor.orgAnnotationFilter
Facilities for Filtering Bioconductor Annotation ResourcesUniProt.ws
R Interface to UniProt Web ServicesEuroBioc2020
European Bioconductor Conference, December, 2020KEGGREST
Client-side REST access to KEGGensemblVEP
R Interface to Ensembl Variant Effect PredictorBioC2015Introduction
Introduction to R and Bioconductor session at BioC2015 July 20-22, Seattle, WaVCFArray
Extension of DelayedArray with on-disk/remote VCF backendBioconductorMeta
Central repository for meta-information about the Bioconductor projectBioconductorAnnotationPipeline
build and push Bioconductor annotation packagesBiocBaseUtils
BiocAsia2021
BiocAsia2021 repositoryEuroBioC2022
European Bioconductor conference website 2022biocViews
Categorized views of R package repositoriesRaggedExperiment
Matrix-like representations of mutation and CN dataAnnotationForge
Tools for building SQLite-based annotation data packagesGOstats
Tools for manipulating GO and microarrays.BSgenomeForge
Tools to forge BSgenome data packagesGSEABase
Gene set enrichment data structures and methodsHubPub
ISMB.OSCA
OSCA tutorial at the ISMB 2023BiocUruguay2015
R / Bioconductor Training Material for Uruguay R Bio CourseHCAMatrixBrowser
β οΈ DEPRECATED β οΈ Download Matrix Data using the HCA APIBioC2016Introduction
hca
Human Cell Atlas data discovery and retrievalLove Open Source and this site? Check out how you can help us