BioSystemsUM/troppo

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Created over 5 years ago
Updated 4 months ago

BioSystemsUM/troppo

BioSystemsUM

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Reconstruction algorithms for Python

DeepMol

DeepMol: A Machine and Deep Learning Framework for Computational Chemistry

MEWpy

Metabolic Engineering Workbench

propythia

Python generic modular semi-automated platform containing functions for the classification of proteins based on their physicochemical properties using ML.

Jupyter Notebook

cobamp

Constraint-based modeling framework for the enumeration of pathway analysis concepts

Jupyter Notebook

ReactEA

ReactEA: Combining Evolutionary Algorithms With Reaction Rules Towards Focused Molecular Design

biotmpy

Jupyter Notebook

DeepSweet

A Machine and Deep Learning pipeline to classify sweetness

Jupyter Notebook

s2m2

Materials for the Summer School in Metabolic Modeling - 2024 edition

Jupyter Notebook

drug_response_pipeline

BioCatalyzer

BioCatalyzer: a rule-based tool to predict compound metabolism

specmine

biomeneco

A project to accelerate gap-filling of metabolic models

deepmol_case_studies

Case Studies from the DeepMol Publication

Jupyter Notebook

bRNAsPipe

Pipeline for RNAseq analysis in Bash and scripts for microarray gene expression analysis in R

bit-analysis

BiGG Integration Tool Analysis

Jupyter Notebook

merlinv4_paper

Models analysis for merlin's version 4 submission on Nucleic Acid Research

Jupyter Notebook

human_ts_models

A repository for tissue-specific model reconstructions using troppo

Jupyter Notebook